RNA id: TU2102679


Basic Information

Item Value
RNA id TU2102679
length 2461
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1836147
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 16669040 ~ 16672709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCATTTCAGACCCGAGATTAGTGGATTAAAAACTGTCCTCTGACTTTATTTCATGTGACTTTACACCATCGAAGTTGTGTATATTGCACTTTTTTACGAACACATTAATGAGTCACCAAATGCTAAACAGCAGATCGGACCACAAGCCCTCAAGTTACTGTTGGCTGATTTCACAGATCCTTTCTCCATCTGTCTTGCTCTCCTTCCTCTGCCTGCCCGTGGAGTTATTGGCCCCTGGAGTCAGTTCTAGGCATTGCAGCGGTCCTGATAGCAACACGTCCAGCCCAGGCGAGAGCAGAACTCAAGCCTAGCACAGCCCTTCTCCCCAGAACCTGTAGAGGAGACCTCCTGATGTAGCAGGCCTGCTGTGTTTTGCTTGAGCACTGTAGGAGCTGGTTCCTCAGCATCAGGAAGTCCTCACCGTAACACTCAATGTTGTAGTCCGCTATGGCAAGGGAAGGAAGAGATGTTCAGAGTTCATTCTCATTAGTGAATACAGTACGTTTAGGCTGGTTCAAAGATCACAAGAGACATGGTTACGTCACAACCTACATAAGGACTTGAATTTGATCTGAGAAAGTATTACAATCTCATGCCAGCACTGTTATGAATGATGCAGAGCGGGAATTCAGTAATGTGAGTGTGCGTGCGCTATACTTGCATTTGTGTGTGCGAGCGACTGTGTGTACGTGAGTTTTTGGGTTTGACCTCAAAATACCCAAGAAAGGAGATCTAAGGGAGTGTAAAAACTACCTCAGGATAATGTTGGTTAACACCAGGGAAAGTGTTCAATCACGTCATCCTgtataagttcaggagtaaaaaaaatgtatttaacaagtcacataataaattgcatggacttaTTCTGTGCGCAATAATAGAGTTTAACATgaattttgaatgactacctcctctctgtaccctacatatacaattatctgtaagatccctcagccgagcagtgaatttgaaacaccgattcaaccacaatggttcagggagtttttccaatacctagcaaagaagggcacctagacatcgaatatccctttgagcattgtgttaaataaaaggttagatcttttcattgtattttttaaaagttattatttacactttggatggtgtatcaatacactcagtcgcaacaaagatacaggcaactcagttgccggagaggaaggaaaccgctcagggatttcaacatgagACCAATGGTTCCTCAGTGAcgtagttacagtttttacttaaattgtcttgaaaatctatggcaagacttgaaaatggccatctagcaatgaccaacaaccaacttgaccagtgtttgaagaatttttaaaTGCAAATAATGTACAATCCAGGTATGCAAAGATTTACTCAGAAaatctcacagctgtaatcgcggACAAAGTTATTTGAACGTATTGACTCGGATGTCAAAATGTATGTAAATGAGACATTTAATTTTCAGTAAATTTGAAAAcattggggtattgtgtagatgtgtgaaaaaatatatatagtccaTTTTGAATTCggactgtaacaacaaaatgggaaataagtcaaggggtatgaatactttctgaaggcactgcaggtCCGACAGGCATGCTTACCGGATCATTCAAGAAACAACAGGCACACAGTGAACCGGAAGATCTGGACTTTGCGGATGACCTTGCTCCactgtctcacaaacacacaaaaatgcAGGACAAGTCTCGGCTCTTGCAAGCAACATAAGCTTAGATCGGACTTCAAATCAACATCAACTGATGAAGAATGTGAAAGCAGGAATCGGTAAAGCCAGAACAGCATAAAAGCTAAACCAAAGACTGAGATTTCTAATCAATGTGAAGGCCATCTTCCTTAACGGGTCTAAGACATGGAGAACCACCAGCAGCATGCTCTGTTAAAAAGTACAAACATTCATCAACCGATGTCTCAGACGCTTACTTGGAATTCATTGGACATATACCATCAGAAACATCTGACTGTGGGAGATCACAAAACAAGTACCTATTGAAGCACAAATGAAGAGGAGGAAGTGGTGCTGGTTAGGCCACACTGGTTAGGCTACACTAAGAAGAAACGTGCATCACCAAACTAGACTCTTACCTTTAGCCCACAAGTTAAACGCAAGAGAGAAAGGCCCATGACCACTTTCATCTACACCTCCACCTGCATCTTCACAGAGCAAGAAATTAAGACTGAGCCACTGATATGGCAACAATAACAACTGGCAAAGGACAGAAAGGGTTGGAAGCAGCTCGGCAATGACCTATGTTCCGCAAGGAACTTAAAAGCACTAGCCAAGGTAAGTAAGTGTGACTTACCTGTGCACAGAGGGAGCAGCAGAAGCAGGACCAGGTAGGCTCTCATTGTTGCTCTCAGCAGAGGAGTTCTCTTAGCAATAGAGAAGTCTTGAGGTTGAAAGTCTATGACAGGTCGAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2102681 lncRNA downstream 603 16668147 ~ 16668437 (-) True G1836149
TU2102670 lncRNA downstream 9613 16658600 ~ 16659427 (-) True G1836141
TU2102673 lncRNA downstream 13307 16654798 ~ 16655733 (-) True G1836143
TU2102671 lncRNA downstream 17306 16651056 ~ 16651734 (-) True G1836142
TU2102672 lncRNA downstream 17521 16650832 ~ 16651519 (-) False G1836142
TU2102677 lncRNA upstream 720 16673429 ~ 16673705 (-) False LOC110502345
TU2102674 lncRNA upstream 1078 16673787 ~ 16677744 (-) True LOC110502345
TU2102757 lncRNA upstream 124187 16796896 ~ 16797106 (-) True G1836219
TU2102804 lncRNA upstream 131233 16803942 ~ 16804152 (-) True G1836265
TU2102808 lncRNA upstream 135567 16808276 ~ 16808576 (-) True G1836269
XR_005039292.1 mRNA downstream 22608 16646380 ~ 16646432 (-) True LOC118943947
trnai-uau-47 mRNA downstream 293067 16375880 ~ 16375973 (-) True trnai-uau-47
XM_021580278.2 mRNA downstream 799989 15865071 ~ 15869051 (-) True LOC110502333
XM_021580275.2 mRNA downstream 864063 15799371 ~ 15804977 (-) True LOC110502332
XM_021580276.2 mRNA downstream 864106 15799371 ~ 15804934 (-) False LOC110502332
XM_021580293.2 mRNA upstream 700 16673409 ~ 16730038 (-) False LOC110502345
XM_021580294.2 mRNA upstream 700 16673409 ~ 16730038 (-) False LOC110502345
XM_036960893.1 mRNA upstream 700 16673409 ~ 16730039 (-) False LOC110502345
XM_021580289.2 mRNA upstream 700 16673409 ~ 16730041 (-) False LOC110502345
XM_021580290.2 mRNA upstream 700 16673409 ~ 16730042 (-) False LOC110502345
TU2101534 other downstream 921305 15745638 ~ 15747735 (-) True G1835092
TU2101434 other downstream 997860 15666203 ~ 15671180 (-) True tmem254
TU2101341 other downstream 1168779 15498754 ~ 15500261 (-) True G1834927
TU2101222 other downstream 1502121 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 2148111 14520349 ~ 14520929 (-) True G1833570
TU2104595 other upstream 750766 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 750766 17423475 ~ 17424399 (-) True LOC110502353
TU2104686 other upstream 1037063 17709772 ~ 17719204 (-) True G1837980
TU2104675 other upstream 1052554 17725263 ~ 17730512 (-) False LOC110502361
TU2105357 other upstream 2176988 18849697 ~ 18854172 (-) True LOC110502394

Expression Profile