RNA id: TU2102811


Basic Information

Item Value
RNA id TU2102811
length 4208
lncRNA type antisense_over
GC content 0.36
exon number 3
gene id G1836272
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 16840570 ~ 16848207 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACAGTATGACACAGCAGAACAACAAACATGCATCTTATGTTACATTCTCTACTTGTAAATGTGTATTCAGTCAATTTTCAGGAACCAACTAAATATATAAGACTGCTGATCACATCTGAGCAATTCTTTTTGCTAATAATTATAACATTCATTTCTAAATTCACTTTTCTCTATGAACACTTTTCCCTCAATACTGAACTGCAAGTCTTTCCAGTTGAGAATATTTCCTGCAGTAAATTTATTCAACTCCATATACATTTGTATTTCacagggagagatgacactgtccCAGAAGTGGACGTCAGTAACTTCCCCCACAAAGGATTGTGAGGAATCAAAACCTCCGCCATAACTGTCTTGCTCTTGAACTAACATTATACTTGGTGTGCCAGTTACAGATGTATCAGGTTTAAGAATCCTCCGTGCACTTCGCTTCCCATTAACCCACAGCTGGGTCAGACCCGTTGTAGAGTCCCAGGTCCAGCAGATGGAGATCCATTCATTTTTTGAATCTGGCAAACTGAAGAAATCCAGTACATCTCCCCTGATATGCACTCGGTACACACCCATGGAGCGTTTGTACAACAACAAATCATTGTCATGAGACTGGGTTGCCAGAGAAAAAAGGGACTGGCCTCGTTCTTGCTCAGAGTTGAACCTCTGACACATGGTCATAGCAGAAATGGGCTTTGAGACGTTGGCATGGAGCTTTACGTGTGAGGTGCTTGTCGTCATTGGGATTACGAACACCTTACCTGAGAGATCTGTAGGACATGGAGAGAGCCAAACTCACCATTAAATAATGTTAAAACAAACCTGCAAGTCTGTCCAATGCGAGTTAATAGTCACAATATTAGAAATGTTAAGGCTTCACGTCCAAATCAtctaaaatgtattgtgtagctcGATGAAGTTACTTCTAGATTATTTGGACATGAAGCCCAAACATTTTTAATATCGGGACTATTGTCTTGCATCGGATTTGTGCCACAACTGCAAAAAAGTTAGCATTTGGTAACTGCAGACCTGGGTAGAAATTAGTTGTATCTTGTAGTTTATTTGTAAATACAAACTTTTCACATACTTGAGGTAGTCGAACATAGTTTATATAGCGTTTCAACTAAAGGCAAAAGAAATGCAGGTCTCAGAAAATTATTTTGTAATACCTCTCATaaaaccaaatactatttgaaagtATTTGAATATGTGCAAGTCATATGAAAACAAAATAAAGCATTATTTGATGGCTGCCAAATATTTGATGAAGAACCAAAAAACGACAACAGTTAGTTGAACTAGTCTAAATATATGATCATAAGCACATGGTTTGGAGAGCTTTTAGATATGCATCTTCAAAATGACTAATAATGATATTTTCATAAAGAGAGAGACGTGAGGTAATTCAGTATCACTTGACATCAAGTTCCAAGACATGTGTAGTAACTTTCTGATTGTTACAATAGCAACAGTGTTGCTATATAGGACATTGGACATTGCTTCAGAATTTCATAATGGAATTATTACATAAATGGAATAAGGAACAGTCACTATTCCTAGTAGTTACAAAGATTCTCAGCTCATTGCTATGCAATTACCAAAGTATTATGTATCAACATGCTAATAATAAAGGTTGCTCCAAAAGTAGTAACAGTTTTATTACAGAGGCACAAGAACAGTTTCATGTTAAGTGTTATTGAGAATGCTAACAGTAACAATATATGTCTATCACGTGTCGAAAGGAAACTAAATATCCCAAAACTGCTTTCTTGAATCGACTACAGCCAAGGTAGGTGGACAATCCTGTTAGTTTGTATTCTGaataaactatccctttaaagttGGTATAGTGTGTGTTTGAAACAAGAACCCACCCTCAGATGACAAAGGGGTTCAAAGTTGCTTCTGCTAAGCATCCAACTTGCTGTTTGCAATGCAAATGGCATTGAATTGAATTCCTATAACCTTTTCAGTGGCATGTTGAAAGAGTCAAACAGTAAAGTAGTTGAGTATAACAACTTACTTATACTTACTGCATCTGTACAAAATATAATTTGTTAATTGGTTGAATTTGATTATGTACACCTGAGGAGATGGACATTCAGGAGAATGGACCTTTACAAAATGTTCAgatataaatgtattgtgtagatcaAATAGGACTGTCAGATTGAAGATTGGAATAGTATAGGAGATTGAGTGTGCTCTATTTATTTATGCCATTAGTTGAAGGCAGCCAATCCAATAGTTTTAGAAAAGTGGTCACTTCctgagatctgtattcaaataaTTATATTAAGTAGCTTCTTTCTCAGATCTGTATTCAAATATATTAAAGACGTAGTCACTTTCTGAGATCTGTATTAAAATAGTTGTAGTCGCCTCCAAAGTAACTATTTGTTCCCCCTGAAAAATAGTAGCATTCACAAAACATAGTTTTAACGTTATTCCAGGTCTAACAAACAGTGTCCAagtaaactaaaccaaagcatggatttctGTCAAACCTTGCCCATAGACTGTTACCAGGGTAAGAATAAAATCTCTCTCAAAGAAGCTCTCACCTTGAAGGTCACCATAACAGCCATAGATCAGGACCAGCAAAAACACCAGCTTCCCCGTTAGATTGAGTGCACTGTAGGAAGAGAACAACAAATTACTGAAAGTATCCCACCTACTATTATTAAATCAGCCTTCAACAATCATGTTGAGTTCTTTgcaaaatttttaaaaaatgtataaatgatGCTGAATTGACTGTGGAGTTCACAGAAGTCATCGGGATTGAAAATTACCTCTCCATATTTTTGGGAATCCTGATGAAGCGAAGCAAACCAGTTTCACCTGAAACCTACTCTGTTTTCCTCTTTTTAAATCAACGGTTAGCAGGGGTGTAATGATTACTGACCAATGGGGAATAATACATACAACTCCCACTTGGGTCATCAGTGTCATTTCAGGGGAATTTGGGGTTGTTAATGTTTATCAGTCAGATCCAATCAAACCTGCAAGGTTATTCATCTCTGTTTACACAACAACCTGTGTAGACACACACTGGGAAAAAGTCAATAAATACATCATGCTTTTTCTGTTTCATTCTCCTCTGAAAATAACAAACTTTGCACTTTGCACAGAGTTCATCTGCATACACATTCTaaatAAAGACACCAGACAATTAGTATGAGATAGTATTGCACTACTATTATCAGAGCTTCTTCTGTTTTCTTTCTGGCATCAAACATATTCACTTTAATACACAGGAATACTGATTTGTACAATGACTTTAAGAGTGCAAGGTGCCGTATCTGGAACTGCATGTTGAAGATAGAAATAGAATAAATAGAGCACACACAATCTCCTATACTATTCAAATCTTCAATCTGACAGTTCTATTTGATCTATgcaatacatttctatctgaacatttTGTAAATGTCCATTCTCCTGAATGTCCATTGCCTCAGGTGTACATAATCAAATTCAACCAATTAACAAATTATATTTTGTACAGATGCAGTAAGTATAAATCAGTTATTATACtcaactactgtactgtatgactcTTTCAACATGCCACTGAAAAGGTTATAGGAATTCAATTCAATGCCATTTGCATTGCAAACAGCAAGTTGGATGCTTAGCAGAAGCAACTTTGAACCCCTTTGTCACCTGAGGGTGTGTTCTTGTTTCAAACACACACTATACCaactttaaagggatagtttattCAGAATACAAACTAACAGGATTGTCCACCTACCTTGGCTGTAGTCGGTTCAAGAAAGCAGTTTTGGGATATTTAGTTTCCTTTCGACATGTGATAGACATATTTGGTTACTGTTAGCATTCTCAATAACACTTAACATGAAACTGTTCTTGTGCCTCTGTAAAAAAACTGTTACTACTTTTGGAGCAACCTTTATTATTAGCATGTTGATACATAATACTTTGGTAATTGCATAACAATGAGCTGAGAATCTTTGTAACTACTAGGAATAGTGACTGTTCCTTATTCCACTAATGTAATAATTCCATTATGCAATTCTAAAGCAATGTCCAATGTCCTATATAGCAACACTGTTGCTATTGTAACAATCAGAAAGTTACTACACATGTCTTGGAACTTGATGTCAAGTGATAATGTATTACCTTATGTCTCTCTGAAGTGAGGCTAAACTTCTCTGTTACTTTCGTATGTAGCTACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2102808 lncRNA downstream 32642 16808276 ~ 16808576 (-) True G1836269
TU2102804 lncRNA downstream 37066 16803942 ~ 16804152 (-) True G1836265
TU2102757 lncRNA downstream 44112 16796896 ~ 16797106 (-) True G1836219
TU2102674 lncRNA downstream 163474 16673787 ~ 16677744 (-) True LOC110502345
TU2102677 lncRNA downstream 167513 16673429 ~ 16673705 (-) False LOC110502345
TU2102853 lncRNA upstream 31098 16879305 ~ 16879624 (-) True G1836312
TU2102951 lncRNA upstream 40970 16889177 ~ 16889643 (-) True G1836397
TU2102956 lncRNA upstream 45378 16893585 ~ 16893931 (-) True G1836402
TU2102958 lncRNA upstream 46387 16894594 ~ 16894813 (-) True G1836404
TU2102959 lncRNA upstream 46710 16894917 ~ 16895179 (-) True G1836405
XM_021580292.2 mRNA downstream 77176 16673409 ~ 16764042 (-) False LOC110502345
XM_021580290.2 mRNA downstream 111176 16673409 ~ 16730042 (-) False LOC110502345
XM_021580289.2 mRNA downstream 111177 16673409 ~ 16730041 (-) False LOC110502345
XM_036960893.1 mRNA downstream 111179 16673409 ~ 16730039 (-) False LOC110502345
XM_021580294.2 mRNA downstream 111180 16673409 ~ 16730038 (-) False LOC110502345
XR_005039155.1 mRNA upstream 43147 16891354 ~ 16923978 (-) False LOC110502346
XM_021580295.2 mRNA upstream 43147 16891354 ~ 16923979 (-) False LOC110502346
XM_036959853.1 mRNA upstream 179542 17027749 ~ 17067514 (-) False LOC110502348
XM_036959854.1 mRNA upstream 179542 17027749 ~ 17067514 (-) False LOC110502348
XM_036959849.1 mRNA upstream 179542 17027749 ~ 17067515 (-) False LOC110502348
TU2101534 other downstream 1093483 15745638 ~ 15747735 (-) True G1835092
TU2101434 other downstream 1170038 15666203 ~ 15671180 (-) True tmem254
TU2101341 other downstream 1340957 15498754 ~ 15500261 (-) True G1834927
TU2101222 other downstream 1674299 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 2320289 14520349 ~ 14520929 (-) True G1833570
TU2104595 other upstream 575268 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 575268 17423475 ~ 17424399 (-) True LOC110502353
TU2104686 other upstream 861565 17709772 ~ 17719204 (-) True G1837980
TU2104675 other upstream 877056 17725263 ~ 17730512 (-) False LOC110502361
TU2105357 other upstream 2001490 18849697 ~ 18854172 (-) True LOC110502394

Expression Profile