RNA id: TCONS_00052139


Basic Information

Item Value
RNA id TCONS_00052139
length 5532
RNA type mRNA
GC content 0.39
exon number 11
gene id XLOC_026807
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54502350 ~ 54524194 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCTGTTCTGAGACACACAACACCATGCTtatcacatttaaaacaaaataaacccaTTTCGCCCACAACAGCAAAGGAGATTCTGCATTCCCAGCGTCACCACCAGCATTGTTGCCTATCATTGTCAGTTTTGATGCTGACAATGCCTCGGCTTCAACAGTTTATAGCCCTGCTGCTCATCACTCTTGCTTATGGCGACGACTGCCCCATTTCCTTCAACATTCCTGAGGTGGTTGAATATGGAGCTTCATTCTCAGTGAACTGCTCCACCAACGTCACTGATCATTTGGGCTTGAGTTGGGAGCCAAATAAAGAGGCTGCGGAGAAAACTGGCGAGATCTCCAAAACTCTAGTGGGAGAGTGGGAGAGCGAATTCTCTTGCTACATCTACTTCAATGAAACACAGCCGTGTTCACAGAATCTCTCAGTTACCATTTATAAGACTCCAGACAGTGTTTCTATCAGCGCCTTGAATCACATTGGACCAATGATAGAGGGAATTCAGTATGAGCTCCAGTGTGATGTTTACAATGTGGCTCCTGCTCAAAGTCTCACTGTCAACTGGTACAAAGGAAAAACTCTGGTGAATCAAACCAGCTTCACTGACACCAGCAAGAGTTCAGTCAACATGACATCTAATCTCCTGATCCAACCGGACAGAACTGATAATGAAGCTCAGTACAGGTGTGAAGCAGCGTTAAACCTGGGAGAAGAAGGACCTCAACCTCCTCCTACAGTCACATCAGAACCTCTCAGCATTACTGTTGAATatgactgcccCATTTCCTTCAACTTTTCTGAGGTGGTGGTTGAATATGGAACTTCATTCTCAGTAAACTGCTCTGCTGAAACCACCAAATATTTGGGCTTGAGTTGGGAGCTAAATGAAGAGACAGTGGAGATCACTAGTGAGATCTCCAAAACCGTGGATCAAATGACGGAGTGGGAGGGCAAATTCTCTTGCTACATCTACTTCAATAACACACAGCCGTGTTCCCGGACTGTCTCAGTTACCATTTATAAGACTCCAGATAGTGTTTCCATCAGCACTGTGAATCACACTGGACCAATGACGGTGGGAAAGCAGTATGAGCTCCAGTGTGATGTTCACAATGTGGCTCCTGCTCAGAGTCTCACTGTCAAATGGTACAAAGGAGAAACTCTGGTGAATCAAACCAGCTTCACTGACACCAGCAAGAGTCCAGTCAGTAAAACATCTAAACTCCTGATCCATCCAAACAGAAATGATGATAGAGCTCAGTACAGGTGTGAAGCGGAGCTGAATCTGGGAGAAGAAGGACCACAACCTCCTcctaaaaacaaatcaaaacctCTCAGCATTACTGTACAATCACATCATATTCTAGATGGTGGATGTCCGATTGAACTAAAGCCAAGGAGAGCTGTTGTGAAATATGGCAGTAGTGTTTCAGCTGACTGCAAATCATTTGTCCCACATGATGGGATAGGATGGGAAGCCACTGTGGGAGGAGTGCCCCTGTCCAAAGCCAGTCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGGAGATACAGCCACCATTCTGCTACATAAACTACAAACAGCAGTGTGAAGTAGCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCTATCAGCGCTGTGGATCAAATAATAAAGGAGGGAAACCAGTATGAGCTCCAgtgtgacatttataatgtgGCTCCTGCTGAGAGTCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTCACAGACACTACCAAGAGTCCAGTCAACATAACATCTTATCTCCTGATCCATCCAGTCAGAGCTGATAATGGAGCTCAGTTCAGATGTGAAACAGAGCTGAACCTGGGAGAAGAAGGACCTCAACCGCCTCCTAAAAACACATCTGAACCTCTCAGCATTCCTGTACACTATGCTCCAGAAATTAAATCTTGTCAGCCCTGGTCACCAAAGAAAGGGTCTACCTTAGATTCATATCCAAAACATTTACATTCTGTTGTGGGCAACCCCCATCCAAGCATCTCCTGGAAACATAATTCATCGCCAGTCAATGCTTCTGCACCTCTTACCGAAACAGATTCTGGCCAATATGAAATCACTGCTAGTAATCATTATGGTGAATCCAATTGCACCATAAGCATCACAGTAGAGTATTCTCCAGAGTTGATCTGCGGAGAAAGCTATGAAGTGAAAGAGAAAACAGTTTTCAGTCCTTGTGATGTTGAGGGAGAACCAAAGCCAGAGTTATCCCTCTACAAAGAAGGAAAAAGGATCCAGCTTTTCAATGGTTTCAGATGGAATGACAGTGGCTTGTATCAGTTAACTGCAAGAAACAAACATGGATCTGTGAATAAAAGCCTTACTATCAACGTCCAGTATGCTCCAAGACTGTTTGCTAGCCAACAGGATTTTGTTGTGGCAAAAGACTACAGGATAATTCTACAGTGCAACTCCTCTGGTAACCCAGAACCAGAGATGTGGTGGAGCTTCAATAACAAGAACATCTCCACCGGGCGGCGCTACATCACCGTCAACATCGAGAAGGCCACGTCTACCAGTGCTGGAAATTATACATGCATTGCCAGGAATGAAATTGGACGACAGGAGAAGGTCTTCACTGTCAAGATAAAAGACAACTCTCGGAGCTACCTTCTAATTGCTGTAGTGGTTATTCCACTGCTTGTTTTATTATTGACATGCCTGTTGTTCTTGTGGAGAAGGCAAAGAGCAAGTGGACGTTATGATGTAACGACACTTAAGTCAAATGAAATGGTTCCGTTAAGCAATGGGGGCACTTAGTGAGTTTTAGCTTGATTTGAAAAGTTGTAAATATGGTTACATGAACAAAGCTGATATAATGAACATCATTTGGGTTTCaagaaataaataacttaaattaaaagACAAACTGTGGCAGATAAATTCAAGAAGAGAGGGCCATTTACCTGAATTCACCATATAAAAGATCATATTATACTCAGATAATCGGCCACTTATGTTGTTGTAAATGTcactgagaaataaaaaaaaaaaaggtgaaattaattgaaaaataaaaaaataaaagagtataacaacccagcaggcacacattgTCTTAAGATGTTtatattaagttagatttaggtcaaGACAACATtgttttgacgtccaataacgacgtcaaatgacattgacatttggttgattttaggttgtgttggacagtgaccaaaatccaacatcaagctaACATCATAAACCAACgtaatattgatgtcaaatactgacatttatttgtcaggtatggcaaccaaaatccaacgtttgaCAGACGCCATAGTGGTAActtccacacaatgtcaagctgtaacatcattagacgttgatatatggttaattttaggttgggtGTTGGACATTGATatcagcctgatgttgggttttgacgtcaaccagattttcatttccgaacaaaatgcaatgtccccacaatgTCAGGGTACTACGTCAATCTGatatcatgttgacgtcctgtgcctgctggaaaGTGCATCAAAGGCAATATTTAACTCCTCGAACTGAATGggcatttttaaaatctttataagCTAAAATTTCCCTAAATATAGTGTCTGTGTTGTCTTTTACGTTAAAGGTGCCGTAAGTGATCTGCCACAATGCTAGCCTGTTAGCATAAACCTCTGAAACAATATAGAGAGCGCGTCACAGGtcatcattgttcaaaaatgaatcaATGTGCCTATAAAatcaacttcacctcagtaaagcaggctaggcagaatagcacTGTGTActtctgttttgttgttaaactaaataaaaatcgacattattgatgctgtaaaaggaccgaatgaaactgaaaatagtcacatcaatctatcggaagattttagtggctgaacaacacttctgtgcatataacccattcataagaACTCGATCTGCTCTGCGTGacaaaaatagctttaaaacagaacattaccagTCTAACAGAAaaacttcagccatggtgtcttccttcctccagcatgcaaaagtaactacAATATCGATTCAGGATTTAAGAAAAAAGTTtggattcagcatgtttttaccgctcactttcgctctctctctctctaatgaaTGCGCAGCACGTGTATGCACAAACGGCAGAGCTGCTAACAAACAGGTACGCAGTAGCTCTTGTCTGCATTTGTttacagacagtttgggctacttatcggaattacgGGAGATGTAGGTCCGACattattttaattggatgaacattttttagttttatgcctcacccagaatataaaaatacatataaacacatttagatcatttactttaatcattaatattggaatgtgaagagacttttaaccagcacaactaaacatgtttctgaagacactcacctactgcacctttaacatttcAGTTTAACCAATTTCTCTAAACCAGCGGTCAccgaacttgttcctggagggccggtgtccttcagattttagctccaactctaattaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacacccaggcaggtgtattgaggTAATTTGGagcaaaaccctgcagggacaccggccctcctggaccgagattggtgacccctgctctaaacagtCAGAATACTAACTGCTGTGATGaaaacaaactgtttaaaatCCTGTTGTAAATATAAACTAATGACAGGGGTCAGCtgttatattgtaaaaaaataaaaatcattattgTCAATATTGCTCTTGATGTTGTAATTAAATATtgatcaaaaatgtttttgtatttaaacaAATAGTGTGATATATTCTGACTATACACATGCAAAACATGCTGGTTCTTTGTAGTGAGTCATCTTTTATGTAAATGCATCTGATTGTCTAAAGGGTTCATTTGATTGCTTATCAGAGTCATAAAAAAGAAATCTGAGGCAAAGTATACAGATCGAAATAGCCTAATAATAttaacacaaaaatgttttaaatctttaCTCATTTGAACATTGAATTTTAATTTCGGGAGAGCACATCATTTAATTTAACTGTGCAAGAGGCCTCTTGAATTTATAGAAAAATTTTGCAACAAACTCACATTCATTGACAAAATGTTGTCCTATGTGTTggctatttacatttacattttatttacatgacttttatttactgtattaaagATATGCCCACTTTTTCTTATTATACTGTCAGatttggttttaattttaattttatttttgataaataacataatattacTAAGATTTTCATGCAATTAAACTGCCAAAAGACAATGAACCACTTCCAAGACAAGACATTTGCATGCGTTCtgcaattttcatatttttcttctttttttatactTCTTGTTTCATTGATTTGACTTTCATCTGTAAATACATTTGATAACGGTTCTGTCTCAGTTATGATGCAATAAACAAGATTTATTAACAAAAGTAATACCAAA

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-6 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in macrophage and notochord.

Ensembl:

ensembl_id ENSDART00000155406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052505 lncRNA downstream 659566 53842532 ~ 53842784 (-) True XLOC_026805
TCONS_00052137 lncRNA downstream 804274 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00053142 lncRNA downstream 913173 53573131 ~ 53589177 (-) True XLOC_026802
TCONS_00052129 lncRNA downstream 1037743 53461700 ~ 53464607 (-) True XLOC_026798
TCONS_00053141 lncRNA downstream 1049568 53449116 ~ 53452782 (-) True XLOC_026797
TCONS_00053143 lncRNA upstream 224202 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00053144 lncRNA upstream 267359 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053145 lncRNA upstream 349207 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00052151 lncRNA upstream 579251 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA upstream 579253 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00052138 mRNA downstream 1996 54431093 ~ 54500354 (-) True XLOC_026806
TCONS_00052135 mRNA downstream 780168 53687645 ~ 53722182 (-) False XLOC_026803
TCONS_00052132 mRNA downstream 942769 53526025 ~ 53559581 (-) False XLOC_026801
TCONS_00052133 mRNA downstream 942942 53529714 ~ 53559408 (-) False XLOC_026801
TCONS_00052134 mRNA downstream 969222 53529716 ~ 53533128 (-) True XLOC_026801
TCONS_00052141 mRNA upstream 33 54524227 ~ 54544612 (-) True XLOC_026808
TCONS_00052142 mRNA upstream 67024 54591218 ~ 54607166 (-) True XLOC_026809
TCONS_00052143 mRNA upstream 91821 54616015 ~ 54669185 (-) True XLOC_026810
TCONS_00052144 mRNA upstream 309464 54833658 ~ 54846444 (-) True XLOC_026813
TCONS_00052145 mRNA upstream 372137 54896331 ~ 54992934 (-) False XLOC_026815
TCONS_00052136 other downstream 812922 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 2594788 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 2954100 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 4384388 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 4687063 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052148 other upstream 539073 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 932159 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 1120015 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 1956618 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 2077706 56601900 ~ 56617041 (-) False XLOC_026836

Expression Profile

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