RNA id: TCONS_00053143


Basic Information

Item Value
RNA id TCONS_00053143
length 308
lncRNA type read_through
GC content 0.46
exon number 2
gene id XLOC_026811
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54748396 ~ 54784321 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGAGaggttttgatgtgtttttgggAGGAGGTTGAGGTCCTTCTTCTCCCAGGTTCAGCTCTGCTTCACATCTGTACTGAGCTCCATCATCAGCTCTGTCTGGATGGATCGGGAGtctaattattttattgactGGACTCTTGGTGTTGTCAGTAAAGTTGGTTTGATTCACCAGAGTTTCTCCTTTGTACCAGTTGACAGTGAGATTCTGAGCAGGAGCCACATTATGAATGTCACACTGGAGCTCATACTGGTTTCCCTCTGTCATTGCTTGATTCGCAGTGCTGATGGAAACACTGTCTGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052505 lncRNA downstream 905612 53842532 ~ 53842784 (-) True XLOC_026805
TCONS_00052137 lncRNA downstream 1050320 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00053142 lncRNA downstream 1159219 53573131 ~ 53589177 (-) True XLOC_026802
TCONS_00052129 lncRNA downstream 1283789 53461700 ~ 53464607 (-) True XLOC_026798
TCONS_00053141 lncRNA downstream 1295614 53449116 ~ 53452782 (-) True XLOC_026797
TCONS_00053144 lncRNA upstream 7232 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053145 lncRNA upstream 89080 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00052151 lncRNA upstream 319124 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA upstream 319126 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00052162 lncRNA upstream 530267 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00052143 mRNA downstream 79211 54616015 ~ 54669185 (-) True XLOC_026810
TCONS_00052142 mRNA downstream 141230 54591218 ~ 54607166 (-) True XLOC_026809
TCONS_00052141 mRNA downstream 203784 54524227 ~ 54544612 (-) True XLOC_026808
TCONS_00052139 mRNA downstream 224202 54502350 ~ 54524194 (-) False XLOC_026807
TCONS_00052140 mRNA downstream 224202 54502368 ~ 54524194 (-) True XLOC_026807
TCONS_00052144 mRNA upstream 49337 54833658 ~ 54846444 (-) True XLOC_026813
TCONS_00052145 mRNA upstream 112010 54896331 ~ 54992934 (-) False XLOC_026815
TCONS_00052146 mRNA upstream 137334 54921655 ~ 54993027 (-) True XLOC_026815
TCONS_00052147 mRNA upstream 261025 55045346 ~ 55079742 (-) False XLOC_026816
TCONS_00052149 mRNA upstream 306909 55091230 ~ 55092051 (-) True XLOC_026817
TCONS_00052136 other downstream 1058968 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 2840834 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 3200146 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 4630434 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 4933109 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052148 other upstream 278946 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 672032 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 859888 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 1696491 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 1817579 56601900 ~ 56617041 (-) False XLOC_026836