RNA id: TU2104920


Basic Information

Item Value
RNA id TU2104920
length 222
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1838202
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18006056 ~ 18006277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCGTGAGGAAGAAGACTGTCCATGGTCAAGAGATCTGAAATACAGTGAGGTCCAGTGTTGCtctgactatgaggttaaagtgcaaactgtcagctttaatttgagcgTATTTTAATCTATATCGGGTGAACCGACTCAAAATAGTCAAAaatgtagtatttggtcccatatttctagcatacaatgattacatcaagcttgtgactctacaaacttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2104917 lncRNA downstream 3972 18001723 ~ 18002084 (-) True G1838199
TU2104914 lncRNA downstream 10569 17995134 ~ 17995487 (-) True G1838196
TU2104909 lncRNA downstream 17117 17988607 ~ 17988939 (-) True G1838191
TU2104885 lncRNA downstream 19075 17949453 ~ 17986981 (-) True G1838168
TU2104882 lncRNA downstream 64735 17941100 ~ 17941321 (-) True G1838166
TU2104979 lncRNA upstream 132444 18138721 ~ 18170916 (-) True G1838254
TU2105032 lncRNA upstream 183289 18189566 ~ 18189923 (-) True G1838299
TU2105055 lncRNA upstream 207495 18213772 ~ 18217411 (-) True G1838322
TU2105092 lncRNA upstream 304734 18311011 ~ 18327290 (-) True LOC110502380
TU2105126 lncRNA upstream 367659 18373936 ~ 18374958 (-) True LOC110502384
XM_021580341.2 mRNA downstream 6130 17997276 ~ 17999926 (-) True LOC110502373
XM_021580342.2 mRNA downstream 6133 17997276 ~ 17999923 (-) False LOC110502373
XM_021580340.2 mRNA downstream 38293 17963757 ~ 17967763 (-) True LOC110502372
XM_021580337.2 mRNA downstream 49574 17948121 ~ 17956482 (-) True LOC110502369
XM_036959675.1 mRNA downstream 124218 17842636 ~ 17881838 (-) True LOC110502367
XM_036959929.1 mRNA upstream 77664 18083941 ~ 18127857 (-) False LOC110502375
XM_036959930.1 mRNA upstream 77664 18083941 ~ 18127858 (-) False LOC110502375
XM_036959927.1 mRNA upstream 77664 18083941 ~ 18127862 (-) False LOC110502375
XM_036959928.1 mRNA upstream 77664 18083941 ~ 18127862 (-) True LOC110502375
XM_021580346.2 mRNA upstream 141262 18147539 ~ 18151845 (-) True LOC110502376
TU2104675 other downstream 275544 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 286852 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 580736 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 581657 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2258321 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 843420 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 1105765 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 1279119 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 1372295 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2937030 20943307 ~ 20943615 (-) True G1841694

Expression Profile