RNA id: TU2105032


Basic Information

Item Value
RNA id TU2105032
length 358
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G1838299
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18189566 ~ 18189923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAGAGGAGGCAGGGGATAGGGGCACCCTCCTGTGGTAGTGCTCAATGTCTGAGGAGCGGGCGAGCACCAGACTGTCATTCTGCGGCCCATTGGGTGCAGGCTGGAGTTTGGAGAGCAGCTGACCAATCCCCTCATAAGGCAGACGCTGCTCGTGGTGTGTGGGCGGTCCGGAGTTGTCCGGTAGGTCCAGCTGGAAACTGACAGATTGTCTGGAGGAGGACTTGGAGGTGAGGCTGGGACTGCTGCCCCCATCTTTATGCAACACTCCTGGGGACAtggaggctgggctgggggtgGAGGTGGATGGGCAAGTGCAGGTACAGGTAGAGGTGGAGTGGCTGGGGGTGCACTGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2104979 lncRNA downstream 18650 18138721 ~ 18170916 (-) True G1838254
TU2104920 lncRNA downstream 183289 18006056 ~ 18006277 (-) True G1838202
TU2104917 lncRNA downstream 187482 18001723 ~ 18002084 (-) True G1838199
TU2104914 lncRNA downstream 194079 17995134 ~ 17995487 (-) True G1838196
TU2104909 lncRNA downstream 200627 17988607 ~ 17988939 (-) True G1838191
TU2105055 lncRNA upstream 23849 18213772 ~ 18217411 (-) True G1838322
TU2105092 lncRNA upstream 121088 18311011 ~ 18327290 (-) True LOC110502380
TU2105126 lncRNA upstream 184013 18373936 ~ 18374958 (-) True LOC110502384
TU2105157 lncRNA upstream 276573 18466496 ~ 18483789 (-) True G1838416
TU2105280 lncRNA upstream 428376 18618299 ~ 18619145 (-) True G1838521
XM_021580346.2 mRNA downstream 37721 18147539 ~ 18151845 (-) True LOC110502376
XM_036959927.1 mRNA downstream 61704 18083941 ~ 18127862 (-) False LOC110502375
XM_036959928.1 mRNA downstream 61704 18083941 ~ 18127862 (-) True LOC110502375
XM_036959930.1 mRNA downstream 61708 18083941 ~ 18127858 (-) False LOC110502375
XM_036959929.1 mRNA downstream 61709 18083941 ~ 18127857 (-) False LOC110502375
XM_021580356.2 mRNA upstream 52775 18242698 ~ 18254105 (-) False LOC110502378
XM_021580357.2 mRNA upstream 52775 18242698 ~ 18254105 (-) False LOC110502378
XM_021580358.2 mRNA upstream 52775 18242698 ~ 18254105 (-) False LOC110502378
XM_036959680.1 mRNA upstream 52775 18242698 ~ 18254105 (-) False LOC110502378
XM_021580354.2 mRNA upstream 52775 18242698 ~ 18255846 (-) False LOC110502378
TU2104675 other downstream 459054 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 470362 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 764246 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 765167 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2441831 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 659774 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 922119 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 1095473 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 1188649 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2753384 20943307 ~ 20943615 (-) True G1841694

Expression Profile