RNA id: TU2105055


Basic Information

Item Value
RNA id TU2105055
length 661
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1838322
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18213772 ~ 18217411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagctgtctcttatcgatggcagttatgatgtcttttaggaccttgagcgtggctgaggtgcacccatgatcagctctgaaaccagattgtatagcagagaaggtacggtgggattcgaaatggtcggtaatctgtttgttaacttggctttcgaagaccttagaaagacagggtagataggatagatatactgtaggtctgtagcagtttgggtctagagtgtcaccccgtatgaagaggggggtgaccgcggcagctttccaatctttgagaatctcagatgatacgaaagagtggttgaacaggctagtaataggggttacaAAAATTTCAGCAGATAATCTTAGAaacagagggtccagattgtctagcccggctgatttgtaggtgtccagattttgcagctctttcagaacatcagctatttggatgaaggagaaatggtgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105032 lncRNA downstream 23849 18189566 ~ 18189923 (-) True G1838299
TU2104979 lncRNA downstream 42856 18138721 ~ 18170916 (-) True G1838254
TU2104920 lncRNA downstream 207495 18006056 ~ 18006277 (-) True G1838202
TU2104917 lncRNA downstream 211688 18001723 ~ 18002084 (-) True G1838199
TU2104914 lncRNA downstream 218285 17995134 ~ 17995487 (-) True G1838196
TU2105092 lncRNA upstream 93600 18311011 ~ 18327290 (-) True LOC110502380
TU2105126 lncRNA upstream 156525 18373936 ~ 18374958 (-) True LOC110502384
TU2105157 lncRNA upstream 249085 18466496 ~ 18483789 (-) True G1838416
TU2105280 lncRNA upstream 400888 18618299 ~ 18619145 (-) True G1838521
TU2105398 lncRNA upstream 586666 18804077 ~ 18805565 (-) True G1838628
XM_021580346.2 mRNA downstream 61927 18147539 ~ 18151845 (-) True LOC110502376
XM_036959927.1 mRNA downstream 85910 18083941 ~ 18127862 (-) False LOC110502375
XM_036959928.1 mRNA downstream 85910 18083941 ~ 18127862 (-) True LOC110502375
XM_036959930.1 mRNA downstream 85914 18083941 ~ 18127858 (-) False LOC110502375
XM_036959929.1 mRNA downstream 85915 18083941 ~ 18127857 (-) False LOC110502375
XM_021580356.2 mRNA upstream 25287 18242698 ~ 18254105 (-) False LOC110502378
XM_021580357.2 mRNA upstream 25287 18242698 ~ 18254105 (-) False LOC110502378
XM_021580358.2 mRNA upstream 25287 18242698 ~ 18254105 (-) False LOC110502378
XM_036959680.1 mRNA upstream 25287 18242698 ~ 18254105 (-) False LOC110502378
XM_021580354.2 mRNA upstream 25287 18242698 ~ 18255846 (-) False LOC110502378
TU2104675 other downstream 483260 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 494568 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 788452 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 789373 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2466037 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 632286 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 894631 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 1067985 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 1161161 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2725896 20943307 ~ 20943615 (-) True G1841694

Expression Profile