RNA id: TCONS_00052148


Basic Information

Item Value
RNA id TCONS_00052148
length 516
RNA type nonsense_mediated_decay
GC content 0.49
exon number 5
gene id XLOC_026816
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55045346 ~ 55079742 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAAAAAACAAGTCCCATCAGTGTGATATTAGTAAGTTCTGGCAGCCGAGGAAATAAACTGCTCTTCCGATACCCGTTCCAGAGAGCATCCGAAAACACGTCCTCTGCTACATGTTTTCGGATATTATTCTTGCCACCATCTTGGCCACCAAGTCTGATATGTGCGGCAAGAAGTTTGAACTAAAAATAGACAATGTGCGATTCGTTGGGCATCCAACCTTACTGCAGCCTCCTCATACTATTCAGGCTTCTAAAACGGACCCCTCCCCTAAAAGAGAGCTGCCCACCATGATTCTGTTcagtgttgtttttgcattacggGCGAATGCTGATGCGTCTGTGATCAGCTGTATGCACAATCTGTCCCGGCGGATCGCCATCGCTCTGCAGCATGAGGAGCGCAGGTGTCAGTACCTCACCAGGGAAGCCAAACTGATGTTGGTGATGCAGGACGAGGTCACCACCATTACTGACTCTGATGGCTCGCCACAGTCACCTTTTCGACAGATCCTTC

Function

GO:

id name namespace
GO:0034198 cellular response to amino acid starvation biological_process
GO:2000785 regulation of autophagosome assembly biological_process
GO:0038202 TORC1 signaling biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:1990130 GATOR1 complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-1348 Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid starvation; and negative regulation of TOR signaling. Predicted to be part of GATOR1 complex. Human ortholog(s) of this gene implicated in focal epilepsy. Orthologous to human NPRL3 (NPR3 like, GATOR1 complex subunit).

Ensembl:

ensembl_id ENSDART00000144457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053145 lncRNA downstream 179087 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00053144 lncRNA downstream 242367 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053143 lncRNA downstream 278946 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00052505 lncRNA downstream 1220483 53842532 ~ 53842784 (-) True XLOC_026805
TCONS_00052137 lncRNA downstream 1365191 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00052151 lncRNA upstream 24201 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA upstream 24203 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00052162 lncRNA upstream 235344 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00053146 lncRNA upstream 759210 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052184 lncRNA upstream 1331897 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00052146 mRNA downstream 70240 54921655 ~ 54993027 (-) True XLOC_026815
TCONS_00052145 mRNA downstream 70333 54896331 ~ 54992934 (-) False XLOC_026815
TCONS_00052144 mRNA downstream 216823 54833658 ~ 54846444 (-) True XLOC_026813
TCONS_00052143 mRNA downstream 394082 54616015 ~ 54669185 (-) True XLOC_026810
TCONS_00052142 mRNA downstream 456101 54591218 ~ 54607166 (-) True XLOC_026809
TCONS_00052149 mRNA upstream 11986 55091230 ~ 55092051 (-) True XLOC_026817
TCONS_00052150 mRNA upstream 19213 55098457 ~ 55099272 (-) True XLOC_026818
TCONS_00052152 mRNA upstream 24201 55103445 ~ 55104310 (-) False XLOC_026819
TCONS_00052154 mRNA upstream 41086 55120330 ~ 55121125 (-) True XLOC_026820
TCONS_00052155 mRNA upstream 48305 55127549 ~ 55128258 (-) True XLOC_026821
TCONS_00052136 other downstream 1373839 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 3155705 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 3515017 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 4945305 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 5247980 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052166 other upstream 377109 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 564965 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 1401568 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 1522656 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 5372256 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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