RNA id: TCONS_00052151


Basic Information

Item Value
RNA id TCONS_00052151
length 713
lncRNA type retained_intron
GC content 0.49
exon number 2
gene id XLOC_026819
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55103445 ~ 55104310 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGATTCCTACTGGACTTTAAGCAAGCACCTAAGGACATCCTAAAGCGTAAACATGGTTGAGTGGACAGATGCCGAGCGCACAGCCATCCTTGGCCTGTGGGGAAAGCTCAATATCGATGAAATCGGACCTCAGGCCCTATCCAGATGTCTGATCGTGTATCCCTGGACTCAGAGATATTTCGCCACATTCGGCAACCTGTCAAGCCCCGCTGCGATCATGGGTAACCCCAAAGTGGCAGCTCATGGGAGGACTGTGATGGGAGGTCTTGAGAGAGCCATCAAGAACATGGACAACGTCAAGAACACCTATGCCGCCCTCAGTGTGATGCACTCTGagaaactgcatgtggatcccgACAACTTCAGGGTACGTCTGCATTAACTGAATGATGTTAATACTTAAACAGCCGTGCTCTTAAATTAGTATATGGGGAACCCGCAGCTTAACTGATCTCTTGTTTTGCAGCTTCTCGCTGATTGCATCACCGTTTGCGCTGCCATGAAGTTCGGCCAAGCTGGTTTCAATGCTGATGTCCAGGAGGCCTGGCAGAAGTTTCTGGCTGTGGTCGTTTCTGCTCTGTGCAGACAGTACCACTAGAGTCTCATCGCCAATGAACGTCAGGTGTTTTGGAGAAGGTCACACCGCGCGGAGATGTTCAAACAAAGATCTAACTCTTTTGCAACAAGatcaataaaataatgttaaaagcA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-18 Predicted to enable oxygen carrier activity. Acts upstream of or within response to hypoxia. Predicted to be part of hemoglobin complex. Is expressed in brain; eye; intermediate cell mass of mesoderm; and vasculature. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

Ensembl:

ensembl_id ENSDART00000145522

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053145 lncRNA downstream 219265 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00053144 lncRNA downstream 282545 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053143 lncRNA downstream 319124 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00052505 lncRNA downstream 1260661 53842532 ~ 53842784 (-) True XLOC_026805
TCONS_00052137 lncRNA downstream 1405369 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00052162 lncRNA upstream 210331 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00053146 lncRNA upstream 734197 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052184 lncRNA upstream 1306884 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00052190 lncRNA upstream 1497668 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00053147 lncRNA upstream 1932837 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052150 mRNA downstream 4173 55098457 ~ 55099272 (-) True XLOC_026818
TCONS_00052149 mRNA downstream 11394 55091230 ~ 55092051 (-) True XLOC_026817
TCONS_00052147 mRNA downstream 23703 55045346 ~ 55079742 (-) False XLOC_026816
TCONS_00052146 mRNA downstream 110418 54921655 ~ 54993027 (-) True XLOC_026815
TCONS_00052145 mRNA downstream 110511 54896331 ~ 54992934 (-) False XLOC_026815
TCONS_00052154 mRNA upstream 16073 55120330 ~ 55121125 (-) True XLOC_026820
TCONS_00052155 mRNA upstream 23292 55127549 ~ 55128258 (-) True XLOC_026821
TCONS_00052156 mRNA upstream 34156 55138413 ~ 55139127 (-) True XLOC_026822
TCONS_00052157 mRNA upstream 42161 55146418 ~ 55147788 (-) False XLOC_026823
TCONS_00052158 mRNA upstream 42345 55146602 ~ 55147731 (-) True XLOC_026823
TCONS_00052148 other downstream 24201 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 1414017 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 3195883 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 3555195 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 4985483 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052166 other upstream 352096 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 539952 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 1376555 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 1497643 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 5347243 60451500 ~ 60451628 (-) True XLOC_026892