RNA id: TU2106490


Basic Information

Item Value
RNA id TU2106490
length 209
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1839641
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19661357 ~ 19661565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatcaataatatgccattaataaactctatgcgaaggagatgtgtcacgctgcatgaggcaaatggtcagaCTGGTTATCTGATCCAcgcatatctgtattccaagtcatgtgaaatccatactgatttccttacatgaactgtaactcagtaaaatctttgaaattgttgcatgttgcttttatatttttgttcagtgtacatacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2106420 lncRNA downstream 142476 19518674 ~ 19518881 (-) True G1839571
TU2106386 lncRNA downstream 153075 19505904 ~ 19508282 (-) True LOC110502410
TU2106416 lncRNA downstream 164127 19496968 ~ 19497230 (-) True G1839567
TU2106177 lncRNA downstream 201901 19459057 ~ 19459456 (-) True G1839343
TU2106174 lncRNA downstream 204128 19457007 ~ 19457229 (-) True G1839340
TU2106497 lncRNA upstream 6588 19668153 ~ 19668355 (-) True G1839648
TU2106505 lncRNA upstream 26859 19688424 ~ 19689668 (-) True G1839656
TU2106774 lncRNA upstream 83333 19744898 ~ 19745127 (-) True G1839891
TU2106775 lncRNA upstream 83876 19745441 ~ 19745677 (-) True G1839892
TU2106805 lncRNA upstream 114662 19776227 ~ 19814265 (-) True G1839917
XM_021580428.2 mRNA downstream 30308 19505830 ~ 19631049 (-) False LOC110502410
XM_036959754.1 mRNA downstream 30308 19505830 ~ 19631049 (-) False LOC110502410
XM_036959755.1 mRNA downstream 30308 19505830 ~ 19631049 (-) False LOC110502410
XM_036959756.1 mRNA downstream 30308 19505830 ~ 19631049 (-) False LOC110502410
XM_021580400.2 mRNA downstream 275892 19261075 ~ 19385465 (-) False LOC110502408
XM_021580437.2 mRNA upstream 17423 19678988 ~ 19725375 (-) False hspa12a
XM_021580438.2 mRNA upstream 17423 19678988 ~ 19725376 (-) False hspa12a
XM_021580439.2 mRNA upstream 20910 19682475 ~ 19725367 (-) True hspa12a
XR_005039163.1 mRNA upstream 217456 19879021 ~ 19881151 (-) True LOC110503056
NM_001124597.1 mRNA upstream 230148 19891713 ~ 19927867 (-) True LOC100136607
TU2106041 other downstream 276315 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 363613 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 540014 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 807185 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 1930845 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 1281742 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1683949 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3521422 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3553920 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3683526 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile