RNA id: TCONS_00052154


Basic Information

Item Value
RNA id TCONS_00052154
length 633
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_026820
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55120330 ~ 55121125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGGTCCCCCTGCTTCCTGTGAGCAGTATAAAACAGCCTGTCCTCCTGGCCTCAGACACAGAAGTTTGCTGTAAAGTCATCCTTCCACAATGAGTCTCTCTGCCAAAGACAAAGCTGCCGTCAAAACCCTGTGGGCCAAGATCGCTGGAAAGGCTGACGACATCGGACACGATGCTCTCTCCAGGATGTTGATTGTCTACCCCCAGACCAAGACCTACTTCTCTCACTGGAAAGACCTGAGCCCAGGCTCTGCCCCAGTGAGGAAACACGGCAAGACTGTGATGGGAGGCGTTGCTGAGGCTGTCAGCAAAATCGATGACCTTAATGCCGGACTCCTGAACCTCAGTGAGCTCCATGCTTTCCAGCTGCGTGTGGACCCCGCCAATTTCAAGATTCTGTCCCACAACATCCTCGTGGTTCTGGCCACTTTGTTCCCCGCCGATTTCACTCCTGAGGCTCATGTTGCAATGGACAAGTTCCTCTCAGCTCTGGCTCTGGCCATGTCTGAGAAGTACAGATAAACACACTTCACTGTGCTCCAAACTCTCTGTTATGTATTGAGACAATAAATTATGATGAAAAACATTAACGAAAGGCCTGTTGTGTATGATTTCATAAcattgtttgtttt

Function

GO:

id name namespace
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0019825 oxygen binding molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0043177 organic acid binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-80 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in several structures, including hematopoietic cell; hematopoietic system; mesoderm; presumptive blood; and renal system. Human ortholog(s) of this gene implicated in Heinz body anemia; alpha thalassemia; familial erythrocytosis 7; and hemoglobin H disease. Orthologous to human HBA1 (hemoglobin subunit alpha 1).

Ensembl:

ensembl_id ENSDART00000125092

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052151 lncRNA downstream 16073 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA downstream 16242 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00053145 lncRNA downstream 236150 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00053144 lncRNA downstream 299430 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053143 lncRNA downstream 336009 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00052162 lncRNA upstream 193463 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00053146 lncRNA upstream 717329 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052184 lncRNA upstream 1290016 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00052190 lncRNA upstream 1480800 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00053147 lncRNA upstream 1915969 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052152 mRNA downstream 16020 55103445 ~ 55104310 (-) False XLOC_026819
TCONS_00052150 mRNA downstream 21058 55098457 ~ 55099272 (-) True XLOC_026818
TCONS_00052149 mRNA downstream 28279 55091230 ~ 55092051 (-) True XLOC_026817
TCONS_00052147 mRNA downstream 40588 55045346 ~ 55079742 (-) False XLOC_026816
TCONS_00052146 mRNA downstream 127303 54921655 ~ 54993027 (-) True XLOC_026815
TCONS_00052155 mRNA upstream 6424 55127549 ~ 55128258 (-) True XLOC_026821
TCONS_00052156 mRNA upstream 17288 55138413 ~ 55139127 (-) True XLOC_026822
TCONS_00052157 mRNA upstream 25293 55146418 ~ 55147788 (-) False XLOC_026823
TCONS_00052158 mRNA upstream 25477 55146602 ~ 55147731 (-) True XLOC_026823
TCONS_00052159 mRNA upstream 40502 55161627 ~ 55214130 (-) False XLOC_026824
TCONS_00052148 other downstream 41086 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 1430902 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 3212768 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 3572080 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 5002368 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052166 other upstream 335228 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 523084 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 1359687 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 1480775 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 5330375 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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