RNA id: TU2107097


Basic Information

Item Value
RNA id TU2107097
length 1529
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G1840194
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20154684 ~ 20156212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTTCAGCGCTGTATTTTTCAATGATGACTTTTGAAACGTGTTGATGAAGAAAAGTTCATAAGATTATCAAGAAGCTGGAAAACATCTAGCTTTTATTTGCTTcaagtgggggtgggggggaattgtaaccacaaaaaaatataaaacgtaagggaaaatggctaattagGATTCAGACCGGAGTGAGATATCTCATTTGACAACATGACCTCAGCTTCATCAAACTATCCCAAAATAATCAAGACTCATTAACTATTAATACAAACGATACAATATTTGGAGATGTTTCATGTTTTTATGAGACTATAAAGACCAATACGCAACACTATCTCCGTTGCCATATTATATATACTACATTGATTATTATTGTCTGTCATTACTATGGTGACTGTTCTAATAAGTAAAGATGTACTAACAGTTCACCATTTAAATCTTCTCTCTTTTCCACTTCTTAATGTGCCATGTTGGTTAGCACAGTTCCACTTAAGATTGACCTAGAACCATGATTTCCAATCTCCAATGTAAAGCCCAAAAGGTAGGCTACCATTATGTCAGATCGTGAAATACGTGTTAAAAAATTTTTTTACGTGGTAAAATTATTAGATCGGTCCAAAAAAAATGGTGTTCATTtttaacaaactgcaaaaatGAATGTGGACCAGAATGTACACGTTATATTTGCATAGTAGCAGTATGCAAATCAGGGAGCCAAATGAACGTCTCTTTCAACGATGCGAtttgtttcctgaagttcaccaAAAAGGATCTGTTCATAAAGAGCCGTTTGTTCGCGAACAACCCATCACTATTGGACACACAGCAATTCTGAGGTTGCGGGACCTTTGAAAAAGAAAATAATGACCTGGTTGAGATGTTCAGAACTACAGTATTGGTAAAGAGTACACAATGGAAATCAGTCCTATTAAGTCCTCAACTCCGCAGGAGTCATAAAATGTGATCCACCGGTCTTTTGCACACCAACTCAACCAAAATCCTGGAACCACTGGATGTTAAATAAATGGGCTTCTGTTAAAGAAAAAATGGTCCAAGTCCCTGTTGCTAATTCAATAAAGTGTATAGCAAAATGTAAAAAGTAAAAAGTAATATGCATAATTTCTGAGGGATTTTCAGGGGTTGGGGCAAGTTGTTAATGAGCATTTTGCCAGCGTGAGGGCCAGTCGTTATCCATCCAGCGTTGCAGAAGCCGCAGCACATCAATGCGCTGGTAAACCCGGCAAAGTTCGGTGAGCTCAGTGACGGTCTTGTGGTTGTTGCGCAGCAGGAACTCTTGTGTGGGGCTGTGGCACATTGAGCCCTGGGTCCGGTGCTCCAGCAGAGTCAGCTCATCATAGCTCATACCCCAACGGCTCGCAAAGTTCTTCCAGTTCTTAACAGTGCAATGATTTGGGTCCAGTTTAAGACGCAGTAAGTCCAGCAAGTCCTTGTCATCCATCAGGTCACTGATCTTTGGAGGTGGAGCTGAGCAACAGCACTTCTCACAGGGGTTGTTCAAGAACTGCAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2107121 lncRNA downstream 24120 20129973 ~ 20130564 (-) True G1840218
TU2107112 lncRNA downstream 36282 20118107 ~ 20118402 (-) True G1840209
TU2107111 lncRNA downstream 36719 20117692 ~ 20117965 (-) True G1840208
TU2107110 lncRNA downstream 37306 20117069 ~ 20117378 (-) True G1840207
TU2107101 lncRNA downstream 49637 20104801 ~ 20105047 (-) True G1840198
TU2107151 lncRNA upstream 20268 20176480 ~ 20176691 (-) True G1840248
TU2107186 lncRNA upstream 46792 20203004 ~ 20203227 (-) True G1840283
TU2108357 lncRNA upstream 116795 20273007 ~ 20349730 (-) False G1841334
TU2108394 lncRNA upstream 146613 20302825 ~ 20304938 (-) True LOC110502426
TU2108358 lncRNA upstream 192580 20348792 ~ 20402232 (-) True G1841334
XM_021580447.2 mRNA downstream 18681 20069197 ~ 20136003 (-) False LOC110502421
XM_021580442.2 mRNA downstream 198738 19944035 ~ 19955946 (-) True LOC110502416
NM_001124597.1 mRNA downstream 226817 19891713 ~ 19927867 (-) True LOC100136607
XR_005039163.1 mRNA downstream 273533 19879021 ~ 19881151 (-) True LOC110503056
XM_021580438.2 mRNA downstream 429308 19678988 ~ 19725376 (-) False hspa12a
XM_021580448.2 mRNA upstream 191 20156403 ~ 20169212 (-) True LOC110502422
XR_002470326.2 mRNA upstream 146081 20302293 ~ 20306390 (-) False LOC110502426
XM_021580456.2 mRNA upstream 608969 20765181 ~ 20774451 (-) True LOC110502434
XM_021580458.2 mRNA upstream 624568 20780780 ~ 20794423 (-) False LOC110502435
XM_036959797.1 mRNA upstream 624568 20780780 ~ 20795549 (-) False LOC110502435
TU2106041 other downstream 769642 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 856940 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1033341 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 1300512 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 2424172 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 787095 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1189302 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3026775 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3059273 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3188879 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile