RNA id: TU2108440


Basic Information

Item Value
RNA id TU2108440
length 250
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G1841394
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20394056 ~ 20411811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcattACAGGACTAAGATGGAGCCGGTGTGGTACGATTCaaacgctcgtcagatgtggcagggcttgtaaactattacagactacaaagagagGGCACAGCCGAGAggtgcccagtgacacgagcgtACCAAACGAGCTAAaatacttctatgctcgcttcgaggcaagtaacactgaaacatgcatgagagcatcagctgttccataagactgtgatcatgctctccacagccgatgtgagtaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108357 lncRNA downstream 44326 20273007 ~ 20349730 (-) False G1841334
TU2108394 lncRNA downstream 89118 20302825 ~ 20304938 (-) True LOC110502426
TU2107186 lncRNA downstream 190829 20203004 ~ 20203227 (-) True G1840283
TU2107151 lncRNA downstream 217365 20176480 ~ 20176691 (-) True G1840248
TU2107097 lncRNA downstream 237844 20154684 ~ 20156212 (-) True G1840194
TU2108517 lncRNA upstream 240978 20652789 ~ 20658335 (-) True G1841470
TU2108599 lncRNA upstream 265004 20676815 ~ 20707882 (-) True G1841547
TU2108671 lncRNA upstream 392576 20804387 ~ 20804679 (-) True G1841610
TU2108673 lncRNA upstream 394805 20806616 ~ 20806961 (-) True G1841612
TU2108675 lncRNA upstream 396432 20808243 ~ 20808453 (-) True G1841614
XR_002470326.2 mRNA downstream 87666 20302293 ~ 20306390 (-) False LOC110502426
XM_021580448.2 mRNA downstream 224844 20156403 ~ 20169212 (-) True LOC110502422
XM_021580447.2 mRNA downstream 258053 20069197 ~ 20136003 (-) False LOC110502421
XM_021580442.2 mRNA downstream 438110 19944035 ~ 19955946 (-) True LOC110502416
NM_001124597.1 mRNA downstream 466189 19891713 ~ 19927867 (-) True LOC100136607
XM_021580456.2 mRNA upstream 353370 20765181 ~ 20774451 (-) True LOC110502434
XM_021580458.2 mRNA upstream 368969 20780780 ~ 20794423 (-) False LOC110502435
XM_036959797.1 mRNA upstream 368969 20780780 ~ 20795549 (-) False LOC110502435
XM_021580457.2 mRNA upstream 368969 20780780 ~ 20795640 (-) True LOC110502435
XM_021580460.2 mRNA upstream 384359 20796170 ~ 20801346 (-) False polr1c
TU2106041 other downstream 1009014 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1096312 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1272713 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 1539884 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 2663544 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 531496 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 933703 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2771176 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2803674 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2933280 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile