RNA id: TU2108673


Basic Information

Item Value
RNA id TU2108673
length 346
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1841612
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20806616 ~ 20806961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAACTCCAGCAGCTCAGAGACAGATGGAGATTCATAGCACCGCTTCTTTAGAGACATGCTGCCACCGTCTGGAGAGGAGGTGTGTGTTAGTTACAGAGACAGAAAAACCTAAGCGGAGCAGAAAACAGTCTGGTCAACAACAATCAAACAAAACCTCTTTCCCATCTGATCCAAGTCAACTTACCTTTAACAGGCAGCACAGCCCCTCCTCTTACCGCATCTGCTCCtcttcatacacacacacgcacatgcacgcatacacacatacacacccctgCAGTTAGCTTCCATTTTTAGCATTCTGTAATTCTATACCTCCTCACCAGTGACGAAAGCATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108671 lncRNA downstream 1937 20804387 ~ 20804679 (-) True G1841610
TU2108599 lncRNA downstream 98734 20676815 ~ 20707882 (-) True G1841547
TU2108517 lncRNA downstream 148281 20652789 ~ 20658335 (-) True G1841470
TU2108440 lncRNA downstream 394805 20394056 ~ 20411811 (-) True G1841394
TU2108358 lncRNA downstream 404384 20348792 ~ 20402232 (-) True G1841334
TU2108675 lncRNA upstream 1282 20808243 ~ 20808453 (-) True G1841614
TU2108708 lncRNA upstream 55451 20862412 ~ 20862668 (-) True G1841646
TU2108710 lncRNA upstream 61192 20868153 ~ 20868472 (-) True G1841648
TU2108750 lncRNA upstream 120214 20927175 ~ 20928627 (-) True G1841688
TU2108762 lncRNA upstream 137646 20944607 ~ 20944893 (-) True G1841696
XM_036959798.1 mRNA downstream 5145 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 5270 20796170 ~ 20801346 (-) False polr1c
XM_021580457.2 mRNA downstream 10976 20780780 ~ 20795640 (-) True LOC110502435
XM_036959797.1 mRNA downstream 11067 20780780 ~ 20795549 (-) False LOC110502435
XM_021580458.2 mRNA downstream 12193 20780780 ~ 20794423 (-) False LOC110502435
XM_021580462.2 mRNA upstream 3176 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA upstream 3176 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036960267.1 mRNA upstream 25540 20832501 ~ 20849619 (-) True LOC110502440
XM_036959816.1 mRNA upstream 337679 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 337679 21144640 ~ 21285930 (-) False LOC110502444
TU2106041 other downstream 1421574 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1508872 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1685273 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 1952444 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 3076104 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 136346 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 538553 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2376026 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2408524 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2538130 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile