RNA id: TU2108778


Basic Information

Item Value
RNA id TU2108778
length 220
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1841712
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20964396 ~ 20964615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggcttcttcagaTCTTCTGCGGGATTGTCAGAAAGAAGGGGTGCTGAGGAGTCTTTTGGTCTGTAATAAAgactttgtggggaaaaactcattctgatttgcTGGGCATGGCTCCCCAGTGGGCCATCCCTGCCCAGTGAAGTGAAATCCATAGgttagagcctaatgaatttatttcaattgacagatttccttatattaagtgtaactcagtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108777 lncRNA downstream 228 20963899 ~ 20964168 (-) True G1841711
TU2108775 lncRNA downstream 2497 20961651 ~ 20961899 (-) True G1841709
TU2108771 lncRNA downstream 7874 20956267 ~ 20956522 (-) True G1841705
TU2108770 lncRNA downstream 8248 20955931 ~ 20956148 (-) True G1841704
TU2108762 lncRNA downstream 19503 20944607 ~ 20944893 (-) True G1841696
TU2108779 lncRNA upstream 535 20965150 ~ 20965360 (-) True G1841713
TU2108792 lncRNA upstream 15329 20979944 ~ 20980165 (-) True G1841726
TU2108797 lncRNA upstream 24737 20989352 ~ 20989578 (-) True G1841731
TU2108801 lncRNA upstream 30352 20994967 ~ 20995575 (-) True G1841735
TU2108806 lncRNA upstream 35506 21000121 ~ 21000359 (-) True G1841740
XM_036960267.1 mRNA downstream 114777 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 149251 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 149251 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 162925 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 163050 20796170 ~ 20801346 (-) False polr1c
XM_036959816.1 mRNA upstream 180025 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 180025 21144640 ~ 21285930 (-) False LOC110502444
XM_036959821.1 mRNA upstream 180025 21144640 ~ 21285930 (-) False LOC110502444
XM_036959823.1 mRNA upstream 180025 21144640 ~ 21285930 (-) False LOC110502444
XM_036959824.1 mRNA upstream 180025 21144640 ~ 21285930 (-) False LOC110502444
TU2108760 other downstream 20781 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1579354 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1666652 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1843053 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2110224 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 380899 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2218372 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2250870 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2380476 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4475192 25439807 ~ 25440387 (-) True G1846858

Expression Profile