RNA id: TU2108797


Basic Information

Item Value
RNA id TU2108797
length 227
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1841731
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20989352 ~ 20989578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctctctctcacacacaaaacaACTGTCCCAGTCATCTCCATATGGACATTTAAGCCCTGAACCATACATGCAGAGAacatacattgagtgtacaaaacattaagaacacctactctttccatgacagactgaccaggtgaaaactatgatcccttattgatgttacttgttaaatccacttcaatcagtttagatgaaggggaggagggagacaggtcaAAAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108792 lncRNA downstream 9187 20979944 ~ 20980165 (-) True G1841726
TU2108779 lncRNA downstream 23992 20965150 ~ 20965360 (-) True G1841713
TU2108778 lncRNA downstream 24737 20964396 ~ 20964615 (-) True G1841712
TU2108777 lncRNA downstream 25184 20963899 ~ 20964168 (-) True G1841711
TU2108775 lncRNA downstream 27453 20961651 ~ 20961899 (-) True G1841709
TU2108801 lncRNA upstream 5389 20994967 ~ 20995575 (-) True G1841735
TU2108806 lncRNA upstream 10543 21000121 ~ 21000359 (-) True G1841740
TU2108807 lncRNA upstream 11236 21000814 ~ 21001062 (-) True G1841741
TU2108818 lncRNA upstream 28902 21018480 ~ 21018740 (-) True G1841752
TU2108820 lncRNA upstream 29835 21019413 ~ 21019640 (-) True G1841754
XM_036960267.1 mRNA downstream 139733 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 174207 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 174207 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 187881 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 188006 20796170 ~ 20801346 (-) False polr1c
XM_036959816.1 mRNA upstream 155062 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 155062 21144640 ~ 21285930 (-) False LOC110502444
XM_036959821.1 mRNA upstream 155062 21144640 ~ 21285930 (-) False LOC110502444
XM_036959823.1 mRNA upstream 155062 21144640 ~ 21285930 (-) False LOC110502444
XM_036959824.1 mRNA upstream 155062 21144640 ~ 21285930 (-) False LOC110502444
TU2108760 other downstream 45737 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1604310 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1691608 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1868009 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2135180 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 355936 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2193409 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2225907 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2355513 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4450229 25439807 ~ 25440387 (-) True G1846858

Expression Profile