RNA id: TU2108801


Basic Information

Item Value
RNA id TU2108801
length 609
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1841735
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20994967 ~ 20995575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctagctagctacatttttagatattacacatttctaattttgacaggaagtggtttcatttcaagtgtactgttcgCTAGCTAACGGTAGCTGGCTGagttgctagctaacgttatgtgtatgatcttattcttcGTATCTCAAACACATTTCcttgactagttatagccataGAACCTGGTTGTTAGCTACCTGTAGATTCATACAGGGGAGTAatgtcatgagttgtgattatggtccattatttagctagctaactacatgtcttaacttctttggggtagggggcagtattgtgtagcttggatgaaaaacgtgccaaaattaagctgcctgctactcagccgtaaaagctagaatatgcatataaatttggatagaaaacactgaagtttctaaaactgtttgaatgatgtctgtgagtataaaacagaactcatatggcaggcaaaaacctgagaaaaaaatccaaccaagaagtgggaaatctgaagtttgtagtttttcaactcagcccccattgaagatacagtgggatattagttatgtttcacttcaaggcttccactagatgtcaacagtatttagaacctgttttgaagattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108797 lncRNA downstream 5389 20989352 ~ 20989578 (-) True G1841731
TU2108792 lncRNA downstream 14802 20979944 ~ 20980165 (-) True G1841726
TU2108779 lncRNA downstream 29607 20965150 ~ 20965360 (-) True G1841713
TU2108778 lncRNA downstream 30352 20964396 ~ 20964615 (-) True G1841712
TU2108777 lncRNA downstream 30799 20963899 ~ 20964168 (-) True G1841711
TU2108806 lncRNA upstream 4546 21000121 ~ 21000359 (-) True G1841740
TU2108807 lncRNA upstream 5239 21000814 ~ 21001062 (-) True G1841741
TU2108818 lncRNA upstream 22905 21018480 ~ 21018740 (-) True G1841752
TU2108820 lncRNA upstream 23838 21019413 ~ 21019640 (-) True G1841754
TU2108821 lncRNA upstream 24135 21019710 ~ 21019915 (-) True G1841755
XM_036960267.1 mRNA downstream 145348 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 179822 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 179822 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 193496 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 193621 20796170 ~ 20801346 (-) False polr1c
XM_036959816.1 mRNA upstream 149065 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 149065 21144640 ~ 21285930 (-) False LOC110502444
XM_036959821.1 mRNA upstream 149065 21144640 ~ 21285930 (-) False LOC110502444
XM_036959823.1 mRNA upstream 149065 21144640 ~ 21285930 (-) False LOC110502444
XM_036959824.1 mRNA upstream 149065 21144640 ~ 21285930 (-) False LOC110502444
TU2108760 other downstream 51352 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1609925 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1697223 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1873624 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2140795 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 349939 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2187412 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2219910 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2349516 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4444232 25439807 ~ 25440387 (-) True G1846858

Expression Profile