RNA id: TU2108826


Basic Information

Item Value
RNA id TU2108826
length 234
lncRNA type intronic
GC content 0.31
exon number 1
gene id G1841760
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21028630 ~ 21028863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaataatgaaacatgttcaatttggcttaaataatgcaaaaacaaagtgttggagaagaaagtaaaagtgcaatatgtgccatgtaaaaaagctaatgtttaagttccttgctcagaacatgagaacatatgaaagttggtggttccttttaacatgagtattcaatattccaaggtaagaggctttaggttgtagttaatatagtatttataggactctctctctctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108825 lncRNA downstream 323 21028052 ~ 21028307 (-) True G1841759
TU2108821 lncRNA downstream 8715 21019710 ~ 21019915 (-) True G1841755
TU2108820 lncRNA downstream 8990 21019413 ~ 21019640 (-) True G1841754
TU2108818 lncRNA downstream 9890 21018480 ~ 21018740 (-) True G1841752
TU2108807 lncRNA downstream 27568 21000814 ~ 21001062 (-) True G1841741
TU2108830 lncRNA upstream 2487 21031350 ~ 21031828 (-) True G1841764
TU2108832 lncRNA upstream 6201 21035064 ~ 21035274 (-) True G1841766
TU2108834 lncRNA upstream 8417 21037280 ~ 21037688 (-) True G1841768
TU2108835 lncRNA upstream 9764 21038627 ~ 21038865 (-) True G1841769
TU2108840 lncRNA upstream 18506 21047369 ~ 21047579 (-) True G1841774
XM_036960267.1 mRNA downstream 179011 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 213485 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 213485 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 227159 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 227284 20796170 ~ 20801346 (-) False polr1c
XM_036959816.1 mRNA upstream 115777 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 115777 21144640 ~ 21285930 (-) False LOC110502444
XM_036959821.1 mRNA upstream 115777 21144640 ~ 21285930 (-) False LOC110502444
XM_036959823.1 mRNA upstream 115777 21144640 ~ 21285930 (-) False LOC110502444
XM_036959824.1 mRNA upstream 115777 21144640 ~ 21285930 (-) False LOC110502444
TU2108760 other downstream 85015 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1643588 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1730886 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1907287 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2174458 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 316651 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2154124 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2186622 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2316228 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4410944 25439807 ~ 25440387 (-) True G1846858

Expression Profile