RNA id: TU2108840


Basic Information

Item Value
RNA id TU2108840
length 211
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1841774
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21047369 ~ 21047579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attaagacactatgttggtgttccctttattttggcagaaatAACACTGAAATGTGTTCACTCTTTTACAGTgtttgtttcatcagctgttgtacactATGACACAAAACACAGGAGAAACTGAATTTTGCTGTCAAATTTTGCaggcactgggcctttaagagaAACAACTAATAGAGAAATGTCAGCACTGCGCTGTTACTGGTATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108835 lncRNA downstream 8504 21038627 ~ 21038865 (-) True G1841769
TU2108834 lncRNA downstream 9681 21037280 ~ 21037688 (-) True G1841768
TU2108832 lncRNA downstream 12095 21035064 ~ 21035274 (-) True G1841766
TU2108830 lncRNA downstream 15541 21031350 ~ 21031828 (-) True G1841764
TU2108826 lncRNA downstream 18506 21028630 ~ 21028863 (-) True G1841760
TU2108841 lncRNA upstream 3457 21051036 ~ 21051331 (-) True G1841775
TU2108844 lncRNA upstream 12403 21059982 ~ 21060188 (-) True G1841778
TU2108850 lncRNA upstream 18447 21066026 ~ 21066230 (-) True G1841784
TU2108853 lncRNA upstream 21161 21068740 ~ 21068981 (-) True G1841787
TU2108854 lncRNA upstream 21668 21069247 ~ 21069500 (-) True G1841788
XM_036960267.1 mRNA downstream 197750 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 232224 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 232224 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 245898 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 246023 20796170 ~ 20801346 (-) False polr1c
XM_036959816.1 mRNA upstream 97061 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 97061 21144640 ~ 21285930 (-) False LOC110502444
XM_036959821.1 mRNA upstream 97061 21144640 ~ 21285930 (-) False LOC110502444
XM_036959823.1 mRNA upstream 97061 21144640 ~ 21285930 (-) False LOC110502444
XM_036959824.1 mRNA upstream 97061 21144640 ~ 21285930 (-) False LOC110502444
TU2108760 other downstream 103754 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1662327 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1749625 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1926026 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2193197 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 297935 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2135408 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2167906 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2297512 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4392228 25439807 ~ 25440387 (-) True G1846858

Expression Profile