RNA id: TU2108870


Basic Information

Item Value
RNA id TU2108870
length 221
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1841803
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21084851 ~ 21085071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTATCTGAAGGCGGGGGCATTAAGATCGCTAAAATATGACTATGATCACACTTCCTCAATTCAAATACTATGGCGACACTATAGGAgagatggtttggtatggtttagAAACTTGAGAACCAAGCTCGAGTTCTGTGTGGCCCTATCACCTGAAATACTATCTTCAAACATCCAGGCTTCCGACATAACTGTCAAATCATTGAAAAAAAGAATAAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108860 lncRNA downstream 11839 21072806 ~ 21073012 (-) True G1841793
TU2108854 lncRNA downstream 15351 21069247 ~ 21069500 (-) True G1841788
TU2108853 lncRNA downstream 15870 21068740 ~ 21068981 (-) True G1841787
TU2108850 lncRNA downstream 18621 21066026 ~ 21066230 (-) True G1841784
TU2108844 lncRNA downstream 24663 21059982 ~ 21060188 (-) True G1841778
TU2108878 lncRNA upstream 10787 21095858 ~ 21096284 (-) True G1841811
TU2108886 lncRNA upstream 22825 21107896 ~ 21108103 (-) True G1841819
TU2108890 lncRNA upstream 27137 21112208 ~ 21112418 (-) True G1841823
TU2108985 lncRNA upstream 175754 21260825 ~ 21328286 (-) True G1841909
TU2109008 lncRNA upstream 216928 21301999 ~ 21601932 (-) True G1841929
XM_036960267.1 mRNA downstream 235232 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 269706 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 269706 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 283380 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 283505 20796170 ~ 20801346 (-) False polr1c
XM_036959816.1 mRNA upstream 59569 21144640 ~ 21285930 (-) False LOC110502444
XM_036959820.1 mRNA upstream 59569 21144640 ~ 21285930 (-) False LOC110502444
XM_036959821.1 mRNA upstream 59569 21144640 ~ 21285930 (-) False LOC110502444
XM_036959823.1 mRNA upstream 59569 21144640 ~ 21285930 (-) False LOC110502444
XM_036959824.1 mRNA upstream 59569 21144640 ~ 21285930 (-) False LOC110502444
TU2108760 other downstream 141236 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1699809 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1787107 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1963508 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2230679 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 260443 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2097916 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2130414 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2260020 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4354736 25439807 ~ 25440387 (-) True G1846858

Expression Profile