RNA id: TCONS_00052166


Basic Information

Item Value
RNA id TCONS_00052166
length 344
RNA type processed_transcript
GC content 0.47
exon number 5
gene id XLOC_026827
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55420176 ~ 55481157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAGAATTTGACCAATAGACATCTTCTGTGTGACCAAAGTCGGGCTTCTGCAGCAGTAGTACAGTGTCTGTACCAGAAAGTCTGCTCTTTGTGTCCACCTTAGATGGGAACCTTCATGCTGTCAGCAAGATATCTGGAACCATCAAATGGACCTTGAAAGAAGATCCTGTTTTACAAGTCCCGACGCACGTGTCAGAGCCTGCATTTCTCCCGGATCCCAATGATGGCAGTTTGTACTCTCTCGGAGGGAAGAATAATGAAGGGTTGACGAAACTGCCGTTTACCATTCCTGAGCTGGTTCAGGCATCACCCTGTCGCAGTTCTGATGGCATCTTATACATGG

Function

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006397 mRNA processing biological_process
GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0036498 IRE1-mediated unfolded protein response biological_process
GO:0001666 response to hypoxia biological_process
GO:1990604 IRE1-TRAF2-ASK1 complex cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004521 endoribonuclease activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04140 Autophagy - animal
ko04210 Apoptosis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko05417 Lipid and atherosclerosis
ko04932 Non-alcoholic fatty liver disease
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-050522-431 Predicted to enable endoribonuclease activity; protein serine/threonine kinase activity; and unfolded protein binding activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be part of IRE1-TRAF2-ASK1 complex. Is expressed in brain. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human ERN1 (endoplasmic reticulum to nucleus signaling 1).

Ensembl:

ensembl_id ENSDART00000154685

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052162 lncRNA downstream 127840 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00052151 lncRNA downstream 352096 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA downstream 352265 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00053145 lncRNA downstream 572173 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00053144 lncRNA downstream 635453 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053146 lncRNA upstream 357297 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052184 lncRNA upstream 929984 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00052190 lncRNA upstream 1120768 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00053147 lncRNA upstream 1555937 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052211 lncRNA upstream 2576457 58057614 ~ 58059819 (-) True XLOC_026851
TCONS_00052163 mRNA downstream 51368 55401951 ~ 55404985 (-) True XLOC_026826
TCONS_00052161 mRNA downstream 127805 55218597 ~ 55328548 (-) False XLOC_026825
TCONS_00052159 mRNA downstream 242223 55161627 ~ 55214130 (-) False XLOC_026824
TCONS_00052160 mRNA downstream 258472 55161637 ~ 55197881 (-) True XLOC_026824
TCONS_00052157 mRNA downstream 308565 55146418 ~ 55147788 (-) False XLOC_026823
TCONS_00052167 mRNA upstream 6104 55487261 ~ 55511569 (-) False XLOC_026828
TCONS_00052168 mRNA upstream 7074 55488231 ~ 55525627 (-) False XLOC_026828
TCONS_00052170 mRNA upstream 7074 55488231 ~ 55537096 (-) False XLOC_026828
TCONS_00052169 mRNA upstream 7074 55488231 ~ 55537096 (-) False XLOC_026828
TCONS_00052171 mRNA upstream 27867 55509024 ~ 55531450 (-) True XLOC_026828
TCONS_00052148 other downstream 377109 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 1766925 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 3548791 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 3908103 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 5338391 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052174 other upstream 163052 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 999655 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 1120743 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 4970343 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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