RNA id: TU2109040


Basic Information

Item Value
RNA id TU2109040
length 1028
RNA type TUCP
GC content 0.42
exon number 2
gene id G1841959
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21345514 ~ 21371799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacagggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccagatttggatacaaaaagatttcccaagctttaaaaatcccaaggagcactgtgcaaacgatattattgaaatggaaggagtatcagaccactgcaaatctaccaagacctgtccgtccctctaaactttcagctcattcaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagattctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtctttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaatgtaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacgtgatggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108985 lncRNA downstream 17228 21260825 ~ 21328286 (-) True G1841909
TU2108890 lncRNA downstream 233096 21112208 ~ 21112418 (-) True G1841823
TU2108886 lncRNA downstream 237411 21107896 ~ 21108103 (-) True G1841819
TU2108878 lncRNA downstream 249230 21095858 ~ 21096284 (-) True G1841811
TU2108870 lncRNA downstream 260443 21084851 ~ 21085071 (-) True G1841803
TU2109092 lncRNA upstream 55663 21427462 ~ 21427887 (-) True G1842008
TU2109123 lncRNA upstream 89157 21460956 ~ 21462159 (-) True G1842039
TU2109247 lncRNA upstream 276447 21648246 ~ 21651632 (-) False G1842145
TU2109248 lncRNA upstream 276447 21648246 ~ 21651632 (-) False G1842145
TU2109249 lncRNA upstream 276447 21648246 ~ 21651632 (-) True G1842145
LOC110502445 mRNA downstream 41083 21298594 ~ 21304431 (-) True LOC110502445
XM_036959817.1 mRNA downstream 59583 21144640 ~ 21285931 (-) False LOC110502444
XM_036959819.1 mRNA downstream 59583 21144640 ~ 21285931 (-) False LOC110502444
XM_036959822.1 mRNA downstream 59583 21144640 ~ 21285931 (-) False LOC110502444
XM_036959826.1 mRNA downstream 59583 21144640 ~ 21285931 (-) False LOC110502444
XM_021580471.2 mRNA upstream 141172 21512971 ~ 21516875 (-) True LOC110502447
XM_021580473.2 mRNA upstream 151935 21523734 ~ 21527540 (-) False LOC110502449
XM_021580472.2 mRNA upstream 151935 21523734 ~ 21528655 (-) True LOC110502449
XM_036959835.1 mRNA upstream 188201 21560000 ~ 21604318 (-) False LOC110502450
XM_036959836.1 mRNA upstream 189858 21561657 ~ 21601765 (-) True LOC110502450
TU2108760 other downstream 401899 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1960472 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 2047770 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 2224171 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2491342 18849697 ~ 18854172 (-) True LOC110502394
TU2111150 other upstream 1811188 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 1843686 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 1973292 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4068008 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 6703126 28074925 ~ 28078251 (-) True G1850441

Expression Profile