RNA id: TU2109247


Basic Information

Item Value
RNA id TU2109247
length 2065
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1842145
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21648246 ~ 21651632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCCCTACATACCTCTGGTTTGCTCTTTCAGACCCACAAAGGCAACAAGAAAGAAGTTGCTACATTAACTGTttctctgggatttgaactaggGGGTACATACCTCAAGTTAGCTCTTTCATGACAACAAAAGGCAACATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGGCTTTTGCAGACAAGGATAATATATTGTTACTCCACGACATAGTATGTTATCACAACTCTATTAAAAGGACATTCTGTACAAGGTGTCACTTCAGTCTTTCTATTTGATGGGAACTACCCCTACCCCCCAACAAACCTCAAGTTAGTTCTTTCATGCCAACAAAAGGCAGAATCAAAAATGGCTCTCTAAAAAATGCTCTCCTCAGATTTGAACTCTCAAACTCTGGTTTGGGGAGCGAATACCAtcaccactactctaccagagagacagggaatagatGTTAAGGGGTACTTTGAAATGCACACATCAAAGACAACATTTCAGAGGTTAGAGAATGGTGTGGGGGCTTGTACTTCTTGGGTCCCCCAACCGTTCCTCAATCTTCTTTTGATGACTACAAACAGAGATTATGAATCTTCAAAACCTACACTATAGGATGGATGTGTTTAGGAACAGGGGACGAAATTCGAAAGAGGCGTATTTCCAATTACCAACAAATAGACCCTAGAAATGTTATTCCAAAATCTTAATATTGGAACTTTGGCCCTTCATTTGCCTACTACTGCCTATAAGCTATCATAACACGTGGGTTTTTTCTTGGGGACAAGGTATCGGAACGCTTTTGAATGGTCTACAAAGCATGCCCCCAGGTCAAAGTTGCCATCTGCACACAAGGTTAGTAATTTCTCCAAATTAAAGTTTGTTACTCCATGACATAATATCACAATACTATTGAAATTACTTTCTTTACAATGTGACTGGAGTGTTGGACTATTTTTtggcccttcctctgacactgcctagtatatacagtaggtcctcGACGGTAGGAAGCTTCTACCCAGTGATGTACTCGCCCGTCAGCAATCAAATTTTATTCATAAATCCCTTACAACATCAGCCGATgttgaaacccagcctaaaaccccaaaacagcaagcaatgcagatgcagtggctaggaaaaactccctagaaaggcaggaacctaggaagaaacctagagaggaaccaggctatgaggcgtggccagtcctcttctggctgtgccggttggagatAACAGTACGTGGCCAAACGTTCATATCACCAGCAGgctcaaataataatcacagtggttgtagagtgcaacaggtcagcacctcaagagtaaatgtcaggtccgggacaaggtagcacgtccggtgaataCGTCatggttccatagctgcaggcagaacagttcaaactggagcagcagcacgatcaGGTGGACTGGGGCCAGCAAAGAGTGATCATgccagatagtcctgaggcatggtcccagggctcaggtcctccgggatagaagggagagggagagagtgaattacagggagcatacttaaattcacacgggacaccagataagacaggataaatactccaggtTTAACTGactgaccctaacccccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2109008 lncRNA downstream 46314 21301999 ~ 21601932 (-) True G1841929
TU2109123 lncRNA downstream 186087 21460956 ~ 21462159 (-) True G1842039
TU2109092 lncRNA downstream 220359 21427462 ~ 21427887 (-) True G1842008
TU2109045 lncRNA downstream 265985 21354681 ~ 21382261 (-) True G1841964
TU2108985 lncRNA downstream 319960 21260825 ~ 21328286 (-) True G1841909
TU2109282 lncRNA upstream 34449 21686081 ~ 21686343 (-) True G1842169
TU2109283 lncRNA upstream 37664 21689296 ~ 21689536 (-) True G1842170
TU2109375 lncRNA upstream 162018 21813650 ~ 21816666 (-) True G1842257
TU2109538 lncRNA upstream 378825 22030457 ~ 22030728 (-) True G1842419
TU2109560 lncRNA upstream 399390 22051022 ~ 22051511 (-) True G1842441
XM_036959835.1 mRNA downstream 43928 21560000 ~ 21604318 (-) False LOC110502450
XM_036959836.1 mRNA downstream 46481 21561657 ~ 21601765 (-) True LOC110502450
XM_021580472.2 mRNA downstream 119591 21523734 ~ 21528655 (-) True LOC110502449
XM_021580473.2 mRNA downstream 120706 21523734 ~ 21527540 (-) False LOC110502449
XM_021580471.2 mRNA downstream 131371 21512971 ~ 21516875 (-) True LOC110502447
XM_036960401.1 mRNA upstream 8826 21660458 ~ 21663289 (-) True LOC118943877
XM_021580477.2 mRNA upstream 26568 21678200 ~ 21822311 (-) True LOC110502452
XM_036959945.1 mRNA upstream 1164625 22816257 ~ 22870825 (-) False LOC110502455
XM_036959943.1 mRNA upstream 1228155 22879787 ~ 22887082 (-) False LOC110503091
XM_036959942.1 mRNA upstream 1228155 22879787 ~ 22897158 (-) False LOC110503091
TU2109040 other downstream 276447 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 704631 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 2263204 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 2350502 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 2526903 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2111150 other upstream 1531355 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 1563853 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 1693459 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 3788175 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 6423293 28074925 ~ 28078251 (-) True G1850441

Expression Profile