RNA id: TU2111012


Basic Information

Item Value
RNA id TU2111012
length 204
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G1843814
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23102509 ~ 23102712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcccccccacctcccctgtATGTCCACTGCCTTTGGGCTGTAGGCCTAATTAGGCTCTAGCCATGATTCTGGCCATCTGCTGGcctctctctgtgtcaattctcaTTGGCTGAACTCTGGCTGAGTGCAAAGTCAGTGTGACACCtgcagtgagtgtgtgcgtgtgataGTGTGTAGGATGTGAGGGAAGAGGGGTGGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2111006 lncRNA downstream 3481 23098693 ~ 23099028 (-) True G1843808
TU2110948 lncRNA downstream 74582 23027715 ~ 23027927 (-) True G1843757
TU2110947 lncRNA downstream 75129 23027148 ~ 23027380 (-) True G1843756
TU2110945 lncRNA downstream 77148 23025124 ~ 23025361 (-) True G1843754
TU2110941 lncRNA downstream 81947 23020354 ~ 23020562 (-) True G1843750
TU2111055 lncRNA upstream 21589 23124301 ~ 23124528 (-) True G1843856
TU2111056 lncRNA upstream 22248 23124960 ~ 23125177 (-) True G1843857
TU2111192 lncRNA upstream 141992 23244704 ~ 23245083 (-) True G1843988
TU2111196 lncRNA upstream 144704 23247416 ~ 23247685 (-) True G1843991
TU2111209 lncRNA upstream 152249 23254961 ~ 23255221 (-) True G1844004
XM_021580481.2 mRNA downstream 96029 22999239 ~ 23006480 (-) True LOC110502457
XM_036959936.1 mRNA downstream 152217 22879787 ~ 22950292 (-) False LOC110503091
XM_021580487.2 mRNA upstream 111193 23213905 ~ 23218749 (-) False LOC110502461
XM_021580488.2 mRNA upstream 241641 23344353 ~ 23358461 (-) False LOC110502462
XM_021580489.2 mRNA upstream 241641 23344353 ~ 23358461 (-) False LOC110502462
NM_001124363.1 mRNA upstream 273432 23376144 ~ 23384221 (-) False LOC100136042
XR_005039090.1 mRNA upstream 274068 23376780 ~ 23384319 (-) True LOC100136042
TU2109040 other downstream 1730710 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 2158894 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 3717467 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 3804765 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 3981166 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2111150 other upstream 80275 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 112773 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 242379 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 2337095 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 4972213 28074925 ~ 28078251 (-) True G1850441

Expression Profile