RNA id: TU2111209


Basic Information

Item Value
RNA id TU2111209
length 261
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1844004
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23254961 ~ 23255221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacaatttcgtataaatcggaaattagctaggttgaatttggttatttgaattacctttttcacatgctttttaaaagagaggttggaatcaagtatgatgccaaggtacttaaaatcagataccacctggagcttctcccctgacacatagacatctggctcagtagcatctgttgccctctttgtgaagaacatgcaaacagtttttttcacattgagatgcaaacacgagtcactgagccactttgtaacctggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2111196 lncRNA downstream 7276 23247416 ~ 23247685 (-) True G1843991
TU2111192 lncRNA downstream 9878 23244704 ~ 23245083 (-) True G1843988
TU2111056 lncRNA downstream 129784 23124960 ~ 23125177 (-) True G1843857
TU2111055 lncRNA downstream 130433 23124301 ~ 23124528 (-) True G1843856
TU2111012 lncRNA downstream 152249 23102509 ~ 23102712 (-) True G1843814
TU2111215 lncRNA upstream 4680 23259901 ~ 23260221 (-) True G1844010
TU2111634 lncRNA upstream 43322 23298543 ~ 23321535 (-) True G1844420
TU2111673 lncRNA upstream 89840 23345061 ~ 23345675 (-) False LOC110502462
TU2111675 lncRNA upstream 95509 23350730 ~ 23350936 (-) True G1844454
TU2111677 lncRNA upstream 96862 23352083 ~ 23352322 (-) True G1844456
XM_021580487.2 mRNA downstream 36212 23213905 ~ 23218749 (-) False LOC110502461
XM_021580481.2 mRNA downstream 248481 22999239 ~ 23006480 (-) True LOC110502457
XM_036959937.1 mRNA downstream 304669 22879787 ~ 22950292 (-) False LOC110503091
XM_021580488.2 mRNA upstream 89132 23344353 ~ 23358461 (-) False LOC110502462
XM_021580489.2 mRNA upstream 89132 23344353 ~ 23358461 (-) False LOC110502462
NM_001124363.1 mRNA upstream 120923 23376144 ~ 23384221 (-) False LOC100136042
XR_005039090.1 mRNA upstream 121559 23376780 ~ 23384319 (-) True LOC100136042
XM_021580498.2 mRNA upstream 591835 23847056 ~ 23849143 (-) True LOC110502466
TU2111150 other downstream 21538 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 36691 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 1883162 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 2311346 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 3869919 19378572 ~ 19385042 (-) True LOC110502408
TU2111672 other upstream 89870 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 2184586 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 4819704 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 5669518 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7896388 31151609 ~ 31189596 (-) False LOC110502574

Expression Profile