RNA id: TU2111634


Basic Information

Item Value
RNA id TU2111634
length 489
lncRNA type read_through
GC content 0.49
exon number 2
gene id G1844420
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23298543 ~ 23321535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatggggatgaggtaggtaaattgggtgggctatttaccgatagactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcattccagtcacaggcagcagagaactggaaggaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgcaggagcgcgtgctacggatgggtgttgccatcgtaaccagtgaactgagataaggcggagctttacctagcatggacttgtagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccagccgactagagcatacaagtcgcagtggtgggtggtataaggtgctttagtgacaaaacggatggcactgtgataaactgcatccagtttgctgagtagagtgttggaagcaattttgtagatgacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2111215 lncRNA downstream 38322 23259901 ~ 23260221 (-) True G1844010
TU2111209 lncRNA downstream 43322 23254961 ~ 23255221 (-) True G1844004
TU2111196 lncRNA downstream 50858 23247416 ~ 23247685 (-) True G1843991
TU2111192 lncRNA downstream 53460 23244704 ~ 23245083 (-) True G1843988
TU2111056 lncRNA downstream 173366 23124960 ~ 23125177 (-) True G1843857
TU2111673 lncRNA upstream 23526 23345061 ~ 23345675 (-) False LOC110502462
TU2111675 lncRNA upstream 29195 23350730 ~ 23350936 (-) True G1844454
TU2111677 lncRNA upstream 30548 23352083 ~ 23352322 (-) True G1844456
TU2111686 lncRNA upstream 47441 23368976 ~ 23369455 (-) True G1844465
TU2111690 lncRNA upstream 50919 23372454 ~ 23372721 (-) True G1844469
XM_021580487.2 mRNA downstream 79794 23213905 ~ 23218749 (-) False LOC110502461
XM_021580481.2 mRNA downstream 292063 22999239 ~ 23006480 (-) True LOC110502457
XM_036959937.1 mRNA downstream 348251 22879787 ~ 22950292 (-) False LOC110503091
XM_021580488.2 mRNA upstream 22818 23344353 ~ 23358461 (-) False LOC110502462
XM_021580489.2 mRNA upstream 22818 23344353 ~ 23358461 (-) False LOC110502462
NM_001124363.1 mRNA upstream 54609 23376144 ~ 23384221 (-) False LOC100136042
XR_005039090.1 mRNA upstream 55245 23376780 ~ 23384319 (-) True LOC100136042
XM_021580498.2 mRNA upstream 525521 23847056 ~ 23849143 (-) True LOC110502466
TU2111150 other downstream 65120 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 80273 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 1926744 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 2354928 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 3913501 19378572 ~ 19385042 (-) True LOC110502408
TU2111672 other upstream 23556 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 2118272 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 4753390 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 5603204 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7830074 31151609 ~ 31189596 (-) False LOC110502574

Expression Profile