RNA id: TU2111983


Basic Information

Item Value
RNA id TU2111983
length 367
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1844758
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23800008 ~ 23805468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagtctgcaaaagacctgagactgggatggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgctaaactgatagagacataccccaagcgacttacagctgtaatcacagcaaaaggtggcgctacaaagtattaacttaagggggctgaatcattttgcacaccca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2111992 lncRNA downstream 40846 23757189 ~ 23759162 (-) True G1844764
TU2111691 lncRNA downstream 427004 23372800 ~ 23373004 (-) True G1844470
TU2111690 lncRNA downstream 427287 23372454 ~ 23372721 (-) True G1844469
TU2111686 lncRNA downstream 430553 23368976 ~ 23369455 (-) True G1844465
TU2111677 lncRNA downstream 447686 23352083 ~ 23352322 (-) True G1844456
TU2112546 lncRNA upstream 55548 23861016 ~ 23861232 (-) True G1845275
TU2112547 lncRNA upstream 56846 23862314 ~ 23862672 (-) True G1845276
TU2112548 lncRNA upstream 57603 23863071 ~ 23863463 (-) True G1845277
TU2112549 lncRNA upstream 58197 23863665 ~ 23864014 (-) True G1845278
TU2112529 lncRNA upstream 59235 23864703 ~ 23865322 (-) True G1845261
XR_005039090.1 mRNA downstream 415689 23376780 ~ 23384319 (-) True LOC100136042
NM_001124363.1 mRNA downstream 415787 23376144 ~ 23384221 (-) False LOC100136042
XM_021580488.2 mRNA downstream 441547 23344353 ~ 23358461 (-) False LOC110502462
XM_021580489.2 mRNA downstream 441547 23344353 ~ 23358461 (-) False LOC110502462
XM_021580487.2 mRNA downstream 581259 23213905 ~ 23218749 (-) False LOC110502461
XM_021580498.2 mRNA upstream 41588 23847056 ~ 23849143 (-) True LOC110502466
XM_021580500.2 mRNA upstream 62171 23867639 ~ 24024871 (-) False LOC110502467
XM_021580501.2 mRNA upstream 62171 23867639 ~ 24036992 (-) True LOC110502467
LOC110503092 mRNA upstream 253504 24058972 ~ 24072489 (-) True LOC110503092
XM_036960859.1 mRNA upstream 310347 24115815 ~ 24117680 (-) False LOC118943923
TU2111672 other downstream 454237 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 566585 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 581738 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 2428209 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 2856393 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 1634339 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 4269457 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 5119271 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7346141 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 7346141 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile