RNA id: TU2112748


Basic Information

Item Value
RNA id TU2112748
length 286
lncRNA type intronic
GC content 0.58
exon number 2
gene id G1845445
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24099004 ~ 24099329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactccatgagggtggtatgagggcccgacgtccacaagtgggggttgtgcttacagcccaacaccgtgcaggacgtttggcactTGCCAGAGAACACATTTGCCACtgacgcccttggggtggcatttctttggggggccgcacagccatccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaagacaatgctagacctcatgtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2112530 lncRNA downstream 232141 23866275 ~ 23866863 (-) True G1845262
TU2112529 lncRNA downstream 233682 23864703 ~ 23865322 (-) True G1845261
TU2112549 lncRNA downstream 234990 23863665 ~ 23864014 (-) True G1845278
TU2112548 lncRNA downstream 235541 23863071 ~ 23863463 (-) True G1845277
TU2112547 lncRNA downstream 236332 23862314 ~ 23862672 (-) True G1845276
TU2112685 lncRNA upstream 1463 24100792 ~ 24113117 (-) True G1845407
TU2112690 lncRNA upstream 13858 24113187 ~ 24116920 (-) False LOC118943923
TU2112692 lncRNA upstream 13858 24113187 ~ 24116920 (-) False LOC118943923
TU2112694 lncRNA upstream 13858 24113187 ~ 24117250 (-) False LOC118943923
TU2112696 lncRNA upstream 13858 24113187 ~ 24116920 (-) False LOC118943923
LOC110503092 mRNA downstream 26515 24058972 ~ 24072489 (-) True LOC110503092
XM_021580501.2 mRNA downstream 62012 23867639 ~ 24036992 (-) True LOC110502467
XM_021580500.2 mRNA downstream 74133 23867639 ~ 24024871 (-) False LOC110502467
XM_021580498.2 mRNA downstream 249861 23847056 ~ 23849143 (-) True LOC110502466
XR_005039090.1 mRNA downstream 714685 23376780 ~ 23384319 (-) True LOC100136042
XM_036960859.1 mRNA upstream 16486 24115815 ~ 24117680 (-) False LOC118943923
XM_036959636.1 mRNA upstream 74832 24174161 ~ 24183941 (-) False gsto1
NM_001160618.1 mRNA upstream 74833 24174162 ~ 24183876 (-) True gsto1
XM_021580511.2 mRNA upstream 193570 24292899 ~ 24360854 (-) False LOC110502475
XM_036960344.1 mRNA upstream 193570 24292899 ~ 24361215 (-) True LOC110502475
TU2111672 other downstream 753233 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 865581 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 880734 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 2727205 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 3155389 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 1340478 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 3975596 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 4825410 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7052280 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 7052280 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile