RNA id: TU2112685


Basic Information

Item Value
RNA id TU2112685
length 856
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1845407
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24100792 ~ 24113117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaccaaaaaaagtgttaaacaaatcaaaatatatttttgattatttaaagtagccaccctttctttgccttgatgacagctttgacactcttggcattctctcaaccagcttcacctgaaatgcttttccaacagtcttggagttcccacctacgctgagcacttgttggctgatttttctttactctgcggtccaactcatcccaaaccatcgcaattgggttgaggtcaggtgattgtggaggccaggtcttctgattttttattttatttaacctttatttaactaggcaagtctgataagaacaaattcttatttacaatgacggcctaagaacagtaggttaactgccttgttcaggggaagaacggcagatttttaccttgtcagcttacgGATTAGATctagcaaccttccagttactggcccaactaggctacctgccgcccctgatacagcaccatcactcttcttcttggtcaaatagcccttttttgacctggaggtatgttttgggtcattgtcctgttgaaaaacaaatgatagtccctctgagcccaaaccagatgggatggcatatcgctgcagaatgcttcgttagccatgctggttaagtatgcctttaattttaaataaatcagtgtcaccagcaaagcatccccacacctcctcctccatgtcctgttgaaaaacaaatgatagtcacactaagcgcaaaccagatgggatggcgtatcactgcagaatgctgtggtagccatgatttgccttgaattataaatataacactgacagtgtcacctgcAAAGCACCCAAAcgcttcacggtgagaaccacacatgcggagatcatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2112748 lncRNA downstream 1463 24099004 ~ 24099329 (-) True G1845445
TU2112530 lncRNA downstream 233929 23866275 ~ 23866863 (-) True G1845262
TU2112529 lncRNA downstream 235470 23864703 ~ 23865322 (-) True G1845261
TU2112549 lncRNA downstream 236778 23863665 ~ 23864014 (-) True G1845278
TU2112548 lncRNA downstream 237329 23863071 ~ 23863463 (-) True G1845277
TU2112690 lncRNA upstream 70 24113187 ~ 24116920 (-) False LOC118943923
TU2112692 lncRNA upstream 70 24113187 ~ 24116920 (-) False LOC118943923
TU2112694 lncRNA upstream 70 24113187 ~ 24117250 (-) False LOC118943923
TU2112696 lncRNA upstream 70 24113187 ~ 24116920 (-) False LOC118943923
TU2112698 lncRNA upstream 70 24113187 ~ 24116920 (-) False LOC118943923
LOC110503092 mRNA downstream 28303 24058972 ~ 24072489 (-) True LOC110503092
XM_021580501.2 mRNA downstream 63800 23867639 ~ 24036992 (-) True LOC110502467
XM_021580500.2 mRNA downstream 75921 23867639 ~ 24024871 (-) False LOC110502467
XM_021580498.2 mRNA downstream 251649 23847056 ~ 23849143 (-) True LOC110502466
XR_005039090.1 mRNA downstream 716473 23376780 ~ 23384319 (-) True LOC100136042
XM_036960859.1 mRNA upstream 2698 24115815 ~ 24117680 (-) False LOC118943923
XM_036959636.1 mRNA upstream 61044 24174161 ~ 24183941 (-) False gsto1
NM_001160618.1 mRNA upstream 61045 24174162 ~ 24183876 (-) True gsto1
XM_021580511.2 mRNA upstream 179782 24292899 ~ 24360854 (-) False LOC110502475
XM_036960344.1 mRNA upstream 179782 24292899 ~ 24361215 (-) True LOC110502475
TU2111672 other downstream 755021 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 867369 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 882522 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 2728993 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 3157177 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 1326690 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 3961808 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 4811622 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7038492 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 7038492 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile