RNA id: TU2113138


Basic Information

Item Value
RNA id TU2113138
length 263
lncRNA type intronic
GC content 0.35
exon number 2
gene id G1845784
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24614539 ~ 24622693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcaagccacagtgtctgatttcaaaaaggctttacaacgaaagcataccttgcgattatgttaggtcagcaccaattcacagaaaaacatacagtggggagaacaagtttttgatacactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacacttcaactgtgagagacgaaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2113095 lncRNA downstream 26805 24574323 ~ 24587734 (-) True LOC110502477
TU2112948 lncRNA downstream 210647 24394066 ~ 24403892 (-) True G1845627
TU2112819 lncRNA downstream 419287 24194755 ~ 24195252 (-) True G1845501
TU2112797 lncRNA downstream 436372 24151269 ~ 24178167 (-) True G1845481
TU2112783 lncRNA downstream 467608 24143453 ~ 24146931 (-) True G1845471
TU2113351 lncRNA upstream 128339 24751032 ~ 24752844 (-) True G1845988
TU2113391 lncRNA upstream 196609 24819302 ~ 24820076 (-) True G1846027
TU2113410 lncRNA upstream 213905 24836598 ~ 24837151 (-) False G1846045
TU2113409 lncRNA upstream 214005 24836698 ~ 24837797 (-) True G1846045
TU2113496 lncRNA upstream 263037 24885730 ~ 24889515 (-) True G1846126
XM_036960344.1 mRNA downstream 253324 24292899 ~ 24361215 (-) True LOC110502475
XM_021580511.2 mRNA downstream 253685 24292899 ~ 24360854 (-) False LOC110502475
XM_036959636.1 mRNA downstream 430598 24174161 ~ 24183941 (-) False gsto1
NM_001160618.1 mRNA downstream 430663 24174162 ~ 24183876 (-) True gsto1
XM_036960859.1 mRNA downstream 496859 24115815 ~ 24117680 (-) False LOC118943923
XM_021580529.2 mRNA upstream 131872 24754565 ~ 24765657 (-) False LOC110502481
XM_036960138.1 mRNA upstream 131872 24754565 ~ 24765658 (-) False LOC110502481
XM_021580527.2 mRNA upstream 131872 24754565 ~ 24766538 (-) False LOC110502481
XM_021580528.2 mRNA upstream 131872 24754565 ~ 24766770 (-) True LOC110502481
XM_021580531.2 mRNA upstream 184280 24806973 ~ 24813358 (-) True LOC110502483
TU2111672 other downstream 1268768 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 1381116 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 1396269 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 3242740 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 3670924 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 817114 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 3452232 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 4302046 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 6528916 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 6528916 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile