RNA id: TU2114124


Basic Information

Item Value
RNA id TU2114124
length 256
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1846716
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25221172 ~ 25258790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtcaatctacacactaatgacaaagcaaaaacaggttgacatttttgcaaatgtataaaaataaaaaacaggaataccttatttacataagtattcagagcctttgctatgagactagaaatggAGCTCAgctgcatcttgtttccattgatcatacttgagatgtctctacaacttgattggagttcacttgtggtaaattcattggacatgatttggaaaggcacacacgggtctatataagggccgtactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2113910 lncRNA downstream 20032 25200796 ~ 25201140 (-) True G1846525
TU2113905 lncRNA downstream 23199 25197761 ~ 25197973 (-) True G1846520
TU2113904 lncRNA downstream 24088 25196884 ~ 25197084 (-) True G1846519
TU2113903 lncRNA downstream 25298 25195662 ~ 25195874 (-) True G1846518
TU2113831 lncRNA downstream 90212 25129602 ~ 25130960 (-) True G1846446
TU2114161 lncRNA upstream 29456 25288246 ~ 25353932 (-) True G1846753
TU2114258 lncRNA upstream 165304 25424094 ~ 25424293 (-) True G1846847
TU2114259 lncRNA upstream 166293 25425083 ~ 25425331 (-) True G1846848
TU2114277 lncRNA upstream 189370 25448160 ~ 25448430 (-) True G1846866
TU2114279 lncRNA upstream 192545 25451335 ~ 25451585 (-) True G1846868
XM_021580534.2 mRNA downstream 28847 25131256 ~ 25192325 (-) True LOC110502487
NM_001124281.1 mRNA downstream 92221 25127611 ~ 25128951 (-) True gnrh1
XR_005039146.1 mRNA downstream 374968 24839909 ~ 24846204 (-) True LOC118943844
XM_021580531.2 mRNA downstream 407814 24806973 ~ 24813358 (-) True LOC110502483
XM_021580528.2 mRNA downstream 454402 24754565 ~ 24766770 (-) True LOC110502481
XR_002470430.2 mRNA upstream 158574 25417364 ~ 25418599 (-) True LOC110503059
LOC110503093 mRNA upstream 444466 25703256 ~ 25704420 (-) True LOC110503093
LOC110503094 mRNA upstream 469698 25728488 ~ 25735096 (-) False LOC110503094
XM_021580551.2 mRNA upstream 626166 25884956 ~ 25932473 (-) False LOC110502495
XM_036960039.1 mRNA upstream 626166 25884956 ~ 25932474 (-) True LOC110502495
TU2111672 other downstream 1875401 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 1987749 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 2002902 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 3849373 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 4277557 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 181017 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 2816135 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 3665949 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5892819 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5892819 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile