RNA id: TU2114258


Basic Information

Item Value
RNA id TU2114258
length 200
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1846847
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25424094 ~ 25424293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcccaggcgttgtagggaggtcatacaggcacgtggaggccacacacactactgagcctcatttttacttgttttaaggacattacatcaaagttggatcagcctgtagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgatcaatttgatttccattgataatttgtgtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2114161 lncRNA downstream 70162 25288246 ~ 25353932 (-) True G1846753
TU2114124 lncRNA downstream 165304 25221172 ~ 25258790 (-) True G1846716
TU2113910 lncRNA downstream 222954 25200796 ~ 25201140 (-) True G1846525
TU2113905 lncRNA downstream 226121 25197761 ~ 25197973 (-) True G1846520
TU2113904 lncRNA downstream 227010 25196884 ~ 25197084 (-) True G1846519
TU2114259 lncRNA upstream 790 25425083 ~ 25425331 (-) True G1846848
TU2114277 lncRNA upstream 23867 25448160 ~ 25448430 (-) True G1846866
TU2114279 lncRNA upstream 27042 25451335 ~ 25451585 (-) True G1846868
TU2114313 lncRNA upstream 81377 25505670 ~ 25505898 (-) True G1846901
TU2114339 lncRNA upstream 97977 25522270 ~ 25522916 (-) True G1846927
XR_002470430.2 mRNA downstream 5495 25417364 ~ 25418599 (-) True LOC110503059
XM_021580534.2 mRNA downstream 231769 25131256 ~ 25192325 (-) True LOC110502487
NM_001124281.1 mRNA downstream 295143 25127611 ~ 25128951 (-) True gnrh1
XR_005039146.1 mRNA downstream 577890 24839909 ~ 24846204 (-) True LOC118943844
XM_021580531.2 mRNA downstream 610736 24806973 ~ 24813358 (-) True LOC110502483
LOC110503093 mRNA upstream 278963 25703256 ~ 25704420 (-) True LOC110503093
LOC110503094 mRNA upstream 304195 25728488 ~ 25735096 (-) False LOC110503094
XM_021580551.2 mRNA upstream 460663 25884956 ~ 25932473 (-) False LOC110502495
XM_036960039.1 mRNA upstream 460663 25884956 ~ 25932474 (-) True LOC110502495
XM_021580552.2 mRNA upstream 515433 25939726 ~ 25947986 (-) False LOC110502496
TU2111672 other downstream 2078323 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 2190671 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 2205824 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 4052295 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 4480479 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 15514 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 2650632 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 3500446 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5727316 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5727316 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile