RNA id: TCONS_00052184


Basic Information

Item Value
RNA id TCONS_00052184
length 706
lncRNA type sense_intronic
GC content 0.41
exon number 2
gene id XLOC_026834
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56411141 ~ 56413023 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cctagtcaagtctttaaattgcactttaagggGAATTCCTGTGTCTCGCAAAATAACTAAAAGAAGATGACCtctcatcatagcaaagacaaaagaaatcagtcattGGAAAACAGTAaaaacctctgttaaacagaacttggTActattttaaaaagaataacaaaactcacagaagggctaatagcgttgtcttcaactgtaagtaAATCATAGTATTATAATGCAGTTTTCAATTCAAATAAATGATTATCATTTATTTGCAATATACAAATCATTACAGTAATGACAACCAGAGGCAGTTATTTAATAGCATTAATGTCCCAAACAAAAAGTCCTGATGGTGGCAGACTCAGACAGGTTTAgtgagtttctgcagagctgattAACAGTGGTTGAGTCCAGATCAGGACAGCAGTGGATTTCTTTCACAGCGCTAGTCGTCTTGCTGGTGTTGTGAATAGAAACAGCAGTCTCATCACATAAGTAGTGTTTCCTCAGAGCGTCAGTGGAGATTAATGAGAGCTCAACCTCCCACCGGCCGGACCAGCAGGCCTCGCTCCGCTAATCCAGGCCTAGCGCTAGTGCGGCTCATCGCTCAGACACGAGAGGCTTTAGCACAATCACGTTTTTGCCTCGTCGGCACAGTTTTGACCCACTAAACTCATCTGCTTATCTGTAATCACGCTTTATAAGCTCAGGATGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053146 lncRNA downstream 571627 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052162 lncRNA downstream 1082628 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00052151 lncRNA downstream 1306884 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA downstream 1307053 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00053145 lncRNA downstream 1526961 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00052190 lncRNA upstream 188902 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00053147 lncRNA upstream 624071 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052211 lncRNA upstream 1644591 58057614 ~ 58059819 (-) True XLOC_026851
TCONS_00053148 lncRNA upstream 1695408 58108431 ~ 58110148 (-) False XLOC_026854
TCONS_00052214 lncRNA upstream 1695408 58108431 ~ 58110154 (-) True XLOC_026854
TCONS_00052178 mRNA downstream 55175 56354644 ~ 56355966 (-) True XLOC_026832
TCONS_00052177 mRNA downstream 381024 55684449 ~ 56030117 (-) False XLOC_026830
TCONS_00052176 mRNA downstream 381024 55684449 ~ 56030117 (-) True XLOC_026830
TCONS_00052173 mRNA downstream 760370 55631128 ~ 55650771 (-) False XLOC_026829
TCONS_00052175 mRNA downstream 760724 55644215 ~ 55650417 (-) True XLOC_026829
TCONS_00052185 mRNA upstream 62753 56475776 ~ 56541723 (-) False XLOC_026833
TCONS_00052187 mRNA upstream 152277 56565300 ~ 56569968 (-) True XLOC_026835
TCONS_00052188 mRNA upstream 188806 56601829 ~ 56617097 (-) False XLOC_026836
TCONS_00052193 mRNA upstream 448036 56861059 ~ 56871984 (-) False XLOC_026837
TCONS_00052192 mRNA upstream 448036 56861059 ~ 56871984 (-) False XLOC_026837
TCONS_00052174 other downstream 760724 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 929984 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 1331897 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 2721713 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 4503579 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052186 other upstream 67789 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 188877 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 4038477 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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