RNA id: TU2114259


Basic Information

Item Value
RNA id TU2114259
length 249
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1846848
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25425083 ~ 25425331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAAACCTTCTAAACAGGTTAGTAATCAACAATGGAACATTTGCGTCCAAGATCAGAGGTTTTGATGAGATATGGTGTGGTTTTACGATATGCATGTCTCAGAGTCACAGATCCTACAATAGAATTCCCAACACCAAATGACCCTTCGCTAAGCCCCGGACAAAAATGTTAAGCACCGAATGGCAGTGCTTCAATGGACAGCAACTGCCGTCGAGTCTGACACCTCAGACAAAGTTCACATTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2114258 lncRNA downstream 790 25424094 ~ 25424293 (-) True G1846847
TU2114161 lncRNA downstream 71151 25288246 ~ 25353932 (-) True G1846753
TU2114124 lncRNA downstream 166293 25221172 ~ 25258790 (-) True G1846716
TU2113910 lncRNA downstream 223943 25200796 ~ 25201140 (-) True G1846525
TU2113905 lncRNA downstream 227110 25197761 ~ 25197973 (-) True G1846520
TU2114277 lncRNA upstream 22829 25448160 ~ 25448430 (-) True G1846866
TU2114279 lncRNA upstream 26004 25451335 ~ 25451585 (-) True G1846868
TU2114313 lncRNA upstream 80339 25505670 ~ 25505898 (-) True G1846901
TU2114339 lncRNA upstream 96939 25522270 ~ 25522916 (-) True G1846927
TU2114340 lncRNA upstream 97754 25523085 ~ 25523365 (-) True G1846928
XR_002470430.2 mRNA downstream 6484 25417364 ~ 25418599 (-) True LOC110503059
XM_021580534.2 mRNA downstream 232758 25131256 ~ 25192325 (-) True LOC110502487
NM_001124281.1 mRNA downstream 296132 25127611 ~ 25128951 (-) True gnrh1
XR_005039146.1 mRNA downstream 578879 24839909 ~ 24846204 (-) True LOC118943844
XM_021580531.2 mRNA downstream 611725 24806973 ~ 24813358 (-) True LOC110502483
LOC110503093 mRNA upstream 277925 25703256 ~ 25704420 (-) True LOC110503093
LOC110503094 mRNA upstream 303157 25728488 ~ 25735096 (-) False LOC110503094
XM_021580551.2 mRNA upstream 459625 25884956 ~ 25932473 (-) False LOC110502495
XM_036960039.1 mRNA upstream 459625 25884956 ~ 25932474 (-) True LOC110502495
XM_021580552.2 mRNA upstream 514395 25939726 ~ 25947986 (-) False LOC110502496
TU2111672 other downstream 2079312 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 2191660 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 2206813 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 4053284 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 4481468 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 14476 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 2649594 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 3499408 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5726278 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5726278 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile