RNA id: TU2114965


Basic Information

Item Value
RNA id TU2114965
length 308
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1847511
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25899996 ~ 25905382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtggcaaacctcttcaaggttaggagcgtttgtcacaaattaagtggtaaactgtcaccaaatcacccaagaatgagagttctttcgaacaggacagtacctgtgtgtttgtttctccatcctggtccacccaggccgtaggcgaggtcaaggatagcagggttcggtacacgaatcgggttctcggtaggtccaggtccaaacgccaacaggtaagtccaaaacaatccagctcatacacggtaaatccagccaatctctattgtctctttctctattgttcatagatccttccagcactctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2114853 lncRNA downstream 81321 25764988 ~ 25818675 (-) True G1847409
TU2114696 lncRNA downstream 164588 25734162 ~ 25735408 (-) True LOC110503094
TU2114340 lncRNA downstream 376631 25523085 ~ 25523365 (-) True G1846928
TU2114339 lncRNA downstream 377080 25522270 ~ 25522916 (-) True G1846927
TU2114313 lncRNA downstream 394098 25505670 ~ 25505898 (-) True G1846901
TU2115031 lncRNA upstream 109441 26014823 ~ 26015088 (-) True G1847576
TU2115034 lncRNA upstream 110529 26015911 ~ 26016597 (-) True G1847579
TU2115035 lncRNA upstream 112078 26017460 ~ 26017691 (-) True G1847580
TU2115036 lncRNA upstream 112617 26017999 ~ 26018296 (-) True G1847581
TU2115325 lncRNA upstream 314822 26220204 ~ 26223088 (-) True G1847862
LOC110503094 mRNA downstream 164900 25728488 ~ 25735096 (-) False LOC110503094
LOC110503093 mRNA downstream 195576 25703256 ~ 25704420 (-) True LOC110503093
XR_002470430.2 mRNA downstream 481397 25417364 ~ 25418599 (-) True LOC110503059
XM_021580534.2 mRNA downstream 707671 25131256 ~ 25192325 (-) True LOC110502487
NM_001124281.1 mRNA downstream 771045 25127611 ~ 25128951 (-) True gnrh1
XM_021580552.2 mRNA upstream 34344 25939726 ~ 25947986 (-) False LOC110502496
XM_021580553.2 mRNA upstream 34344 25939726 ~ 25947986 (-) False LOC110502496
XR_002470336.2 mRNA upstream 34344 25939726 ~ 25947986 (-) True LOC110502496
XM_021580558.2 mRNA upstream 321248 26226630 ~ 26230546 (-) True LOC110502501
XM_021580559.2 mRNA upstream 488851 26394233 ~ 26398133 (-) False LOC110502502
TU2114269 other downstream 459609 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 2554225 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 2666573 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 2681726 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 4528197 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 2169543 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 3019357 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5246227 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5246227 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 5312215 31217597 ~ 31218171 (-) True G1854905

Expression Profile