RNA id: TCONS_00052189


Basic Information

Item Value
RNA id TCONS_00052189
length 822
RNA type nonsense_mediated_decay
GC content 0.43
exon number 5
gene id XLOC_026836
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56601829 ~ 56617097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTTTTGATTACTTGTGAGCAAACATTTCAAACTCAAAAGCAGAAGAAAATGAATTTTTgataactataaaaaaaatcatatattggCTAGATGAGGAAAACGGATAAGTGAACTCTGTAATAATAGCAGCAGTGTTTAAAATCAGCAAAATGAGCCGAAAAAGAGCTCTGATCGCGGACACTTTCTGTTTGAAGAGACGCAGATGTGCAGCTGACAGTTTAACGGGAGAGACTCACGAATGATTTGCGTGAAAACGGCGAGCTGCTGATGTTCCAGCTGGGCTTCGACTCGGAGGCCTTCGCTCTGGTGTTTGCTGAGGATTACAGAGCCAAAGTCCTTCAGGAGGAAGCTGGAAGAAAAACCCTGGGAGCCGCTGAGAAGTTTCTGGATAAGCTCATTCCCGGCTGCTCCGATTTAAGTTTCAACAAAGACAAAATGCTGAAAGAGTTCCTCTTCTCCGACTCTGAGATCACGCAGCTGGTGAAGTCTGGTCTCCTCACTGTGAGAGATGCAGGCAGCTGGTGGCTCTCAATCCCAAACTCTGGCAGATTCATTAAGTACTTCATTAAAGGGCGTAAAGCTGTACTTAACATGGTGAAGAAATCCAAATACAGTGAAATCTTAAGGACTGAGCTGGAGGAGCGTCGCACAACTGCACAGGTTAAGTTCCAGATGAAGTATCACGTTCATGATATCATTGGAGCAGACTTAGTAGAATGTATACAGACCACATCAGGGACAGTATTACGATACGTGGACGGAAACAACTAACactttttttatgattttcttaTTGTACAAAATGGATTGTAGATGTA

Function

GO:

id name namespace
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-000616-11 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in positive regulation of Ras protein signal transduction and protein phosphorylation. Orthologous to human STK19 (serine/threonine kinase 19).

Ensembl:

ensembl_id ENSDART00000129481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052184 lncRNA downstream 188877 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00053146 lncRNA downstream 762386 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052162 lncRNA downstream 1273387 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00052151 lncRNA downstream 1497643 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00053147 lncRNA upstream 420053 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052211 lncRNA upstream 1440573 58057614 ~ 58059819 (-) True XLOC_026851
TCONS_00053148 lncRNA upstream 1491390 58108431 ~ 58110148 (-) False XLOC_026854
TCONS_00052214 lncRNA upstream 1491390 58108431 ~ 58110154 (-) True XLOC_026854
TCONS_00052219 lncRNA upstream 1593264 58210305 ~ 58212028 (-) False XLOC_026858
TCONS_00052187 mRNA downstream 31932 56565300 ~ 56569968 (-) True XLOC_026835
TCONS_00052183 mRNA downstream 60149 56409617 ~ 56541751 (-) False XLOC_026833
TCONS_00052182 mRNA downstream 60149 56409617 ~ 56541751 (-) False XLOC_026833
TCONS_00052185 mRNA downstream 60177 56475776 ~ 56541723 (-) False XLOC_026833
TCONS_00052181 mRNA downstream 89427 56409617 ~ 56512473 (-) False XLOC_026833
TCONS_00052193 mRNA upstream 244018 56861059 ~ 56871984 (-) False XLOC_026837
TCONS_00052192 mRNA upstream 244018 56861059 ~ 56871984 (-) False XLOC_026837
TCONS_00052191 mRNA upstream 244018 56861059 ~ 56871984 (-) False XLOC_026837
TCONS_00052194 mRNA upstream 244071 56861112 ~ 56871330 (-) True XLOC_026837
TCONS_00052195 mRNA upstream 265791 56882832 ~ 56889052 (-) False XLOC_026838
TCONS_00052186 other downstream 26935 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 951483 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 1120743 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 1522656 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 2912472 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052254 other upstream 3834459 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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