RNA id: TU2115685



Basic Information


Item Value
RNA id TU2115685
length 238
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1848203
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26467965 ~ 26468202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTCAATAGATGTACATGCATTACAAtatgtgatgtactgtaaatGTAATGGTAAAGCACAGTGCACATCCTGCAGACTTACCCCATACATAACATTCTTTTGGCGAAATGTTCTCATGATCGAATTGACACCACAATCTTTTCAGATTGTCATTATTTGAACTAATCTGGCATCCTCTGCAATGGTAAGGCCTCTGTTTACCACACTGTCATGATTATGGCCCGGACTTCATGAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2115677 lncRNA downstream 20124 26446243 ~ 26447841 (-) True G1848195
TU2115661 lncRNA downstream 40458 26427254 ~ 26427507 (-) True G1848183
TU2115655 lncRNA downstream 49803 26417901 ~ 26418162 (-) True G1848177
TU2115638 lncRNA downstream 70178 26387522 ~ 26397787 (-) True LOC110502502
TU2115506 lncRNA downstream 97783 26369904 ~ 26370182 (-) True G1848039
TU2115745 lncRNA upstream 76606 26544808 ~ 26546370 (-) True G1848261
TU2116177 lncRNA upstream 109082 26577284 ~ 26587239 (-) True G1848675
TU2116208 lncRNA upstream 143014 26611216 ~ 26624631 (-) True G1848704
TU2116917 lncRNA upstream 784765 27252967 ~ 27274918 (-) False LOC110502513
TU2116920 lncRNA upstream 812273 27280475 ~ 27280703 (-) False LOC110502513
XM_021580562.2 mRNA downstream 2075 26457010 ~ 26465890 (-) False cuzd1.2
XM_021580563.2 mRNA downstream 2075 26457010 ~ 26465890 (-) True cuzd1.2
XM_021580561.2 mRNA downstream 61411 26403613 ~ 26406554 (-) True LOC110502503
XM_021580559.2 mRNA downstream 69832 26394233 ~ 26398133 (-) False LOC110502502
XM_021580558.2 mRNA downstream 237419 26226630 ~ 26230546 (-) True LOC110502501
XM_036960214.1 mRNA upstream 806350 27274552 ~ 27309747 (-) False LOC110502513
XM_036960215.1 mRNA upstream 806350 27274552 ~ 27310171 (-) False LOC110502513
XM_036960216.1 mRNA upstream 807828 27276030 ~ 27309744 (-) False LOC110502513
XM_021580585.2 mRNA upstream 955690 27423892 ~ 27435842 (-) False LOC110502517
XM_021580587.2 mRNA upstream 955690 27423892 ~ 27435842 (-) False LOC110502517
TU2114269 other downstream 1027578 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 3122194 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 3234542 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 3249695 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 5096166 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 1606723 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 2456537 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 4683407 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 4683407 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 4749395 31217597 ~ 31218171 (-) True G1854905

Expression Profile