RNA id: TU2116177


Basic Information

Item Value
RNA id TU2116177
length 244
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1848675
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26577284 ~ 26587239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttttttataagataagtttaatgctagctagcaacttaccttggcttactgcattcgcgtaacaggcagtctcctcgtggagtgcaatgagaggcaggtggttagagctttggactagttaactgtaaggttgcaagattgaatcccccgagctgacaaggtaaaaatctgtcgttctgcccctgaacgaggcaattaacccacctttcctaggccgtcattgaaaataagaatgtgttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2115745 lncRNA downstream 30914 26544808 ~ 26546370 (-) True G1848261
TU2115685 lncRNA downstream 109082 26467965 ~ 26468202 (-) True G1848203
TU2115677 lncRNA downstream 129443 26446243 ~ 26447841 (-) True G1848195
TU2115661 lncRNA downstream 149777 26427254 ~ 26427507 (-) True G1848183
TU2115655 lncRNA downstream 159122 26417901 ~ 26418162 (-) True G1848177
TU2116208 lncRNA upstream 23977 26611216 ~ 26624631 (-) True G1848704
TU2116917 lncRNA upstream 665728 27252967 ~ 27274918 (-) False LOC110502513
TU2116920 lncRNA upstream 693236 27280475 ~ 27280703 (-) False LOC110502513
TU2116938 lncRNA upstream 695074 27282313 ~ 27282533 (-) True G1849386
TU2116942 lncRNA upstream 697230 27284469 ~ 27284774 (-) True G1849390
XM_021580562.2 mRNA downstream 111394 26457010 ~ 26465890 (-) False cuzd1.2
XM_021580563.2 mRNA downstream 111394 26457010 ~ 26465890 (-) True cuzd1.2
XM_021580561.2 mRNA downstream 170730 26403613 ~ 26406554 (-) True LOC110502503
XM_021580559.2 mRNA downstream 179151 26394233 ~ 26398133 (-) False LOC110502502
XM_021580558.2 mRNA downstream 346738 26226630 ~ 26230546 (-) True LOC110502501
XM_036960214.1 mRNA upstream 687313 27274552 ~ 27309747 (-) False LOC110502513
XM_036960215.1 mRNA upstream 687313 27274552 ~ 27310171 (-) False LOC110502513
XM_036960216.1 mRNA upstream 688791 27276030 ~ 27309744 (-) False LOC110502513
XM_021580585.2 mRNA upstream 836653 27423892 ~ 27435842 (-) False LOC110502517
XM_021580587.2 mRNA upstream 836653 27423892 ~ 27435842 (-) False LOC110502517
TU2114269 other downstream 1136897 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 3231513 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 3343861 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 3359014 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 5205485 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 1487686 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 2337500 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 4564370 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 4564370 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 4630358 31217597 ~ 31218171 (-) True G1854905

Expression Profile