RNA id: TU2117160


Basic Information

Item Value
RNA id TU2117160
length 399
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1849591
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27583328 ~ 27583726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatataagttaaagcttggtcacaaatgggtctttcaaatggacaatgaccccaagcattcttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagcccagacctcaatgctatagaacatttttgggcagaactgaaaaagcgtgtgcgagcaaggtggcctacaaacctgactcagttacatcagatCTGTTAGGAAGAATGGAcaaaaattcccccaacttattgtgggaagcttgtggaaggctacccgaaacgtttgacccaagtttaacaatttaaaggcaatgctaccaaatactaattgagtttatgtaaacttctgtcccactgggaatgtgatgaaaaaaataattctctctactat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2117123 lncRNA downstream 28175 27554941 ~ 27555153 (-) True G1849555
TU2117059 lncRNA downstream 59868 27436126 ~ 27523460 (-) True G1849493
TU2117091 lncRNA downstream 89955 27489311 ~ 27493373 (-) True G1849524
TU2116968 lncRNA downstream 260498 27322353 ~ 27322830 (-) True G1849416
TU2116962 lncRNA downstream 265709 27317419 ~ 27317619 (-) True G1849410
TU2117170 lncRNA upstream 7073 27590799 ~ 27590998 (-) True G1849601
TU2117173 lncRNA upstream 9723 27593449 ~ 27593665 (-) True G1849604
TU2117191 lncRNA upstream 19081 27602807 ~ 27603044 (-) True G1849622
TU2117197 lncRNA upstream 24635 27608361 ~ 27608761 (-) True G1849628
TU2117210 lncRNA upstream 32841 27616567 ~ 27616977 (-) True G1849641
XM_021580595.2 mRNA downstream 129448 27449622 ~ 27453880 (-) True si:ch211-248a14.8
XM_021580587.2 mRNA downstream 147486 27423892 ~ 27435842 (-) False LOC110502517
XM_021580601.2 mRNA upstream 266378 27850104 ~ 27859306 (-) True LOC110502526
XM_036960074.1 mRNA upstream 276366 27860092 ~ 27982179 (-) False LOC110502525
XM_021580599.2 mRNA upstream 276366 27860092 ~ 27983425 (-) False LOC110502525
XM_021580600.2 mRNA upstream 276366 27860092 ~ 27983425 (-) True LOC110502525
XR_002470344.2 mRNA upstream 531869 28115595 ~ 28115991 (-) False LOC110502532
TU2114269 other downstream 2142941 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4237557 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4349905 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4365058 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 6211529 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 491199 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 1341013 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3567883 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3567883 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3633871 31217597 ~ 31218171 (-) True G1854905

Expression Profile