RNA id: TU2117197


Basic Information

Item Value
RNA id TU2117197
length 401
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1849628
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27608361 ~ 27608761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccatcagccactccttgggcaacaatatatattttgccaattggcctgggcCCTTTTACTACATGGAGCccagtgtagtgcagtgtagtgctCTTTTGCACCcgagtatctctacttgcacattcatcttctgcacatctatcactccagtgtttaattgctaaattgtaattagttCACCACCCTAGCCTATCTATTGCCTTACCACCCttgtcttacctcatttgcacacactgtatatggactttttctattgtgttactgactgtatgtttgtttattccatgtgtaactctgtgttgttgtttgtgtcacactgctttgctttatcttggccaggttgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2117191 lncRNA downstream 5317 27602807 ~ 27603044 (-) True G1849622
TU2117173 lncRNA downstream 14696 27593449 ~ 27593665 (-) True G1849604
TU2117170 lncRNA downstream 17363 27590799 ~ 27590998 (-) True G1849601
TU2117160 lncRNA downstream 24635 27583328 ~ 27583726 (-) True G1849591
TU2117123 lncRNA downstream 53208 27554941 ~ 27555153 (-) True G1849555
TU2117210 lncRNA upstream 7806 27616567 ~ 27616977 (-) True G1849641
TU2117840 lncRNA upstream 159043 27767804 ~ 27768666 (-) True G1850245
TU2117841 lncRNA upstream 160194 27768955 ~ 27769453 (-) True G1850246
TU2117843 lncRNA upstream 162452 27771213 ~ 27772250 (-) True G1850248
TU2117844 lncRNA upstream 165371 27774132 ~ 27774402 (-) True G1850249
XM_021580595.2 mRNA downstream 154481 27449622 ~ 27453880 (-) True si:ch211-248a14.8
XM_021580587.2 mRNA downstream 172519 27423892 ~ 27435842 (-) False LOC110502517
XM_021580601.2 mRNA upstream 241343 27850104 ~ 27859306 (-) True LOC110502526
XM_036960074.1 mRNA upstream 251331 27860092 ~ 27982179 (-) False LOC110502525
XM_021580599.2 mRNA upstream 251331 27860092 ~ 27983425 (-) False LOC110502525
XM_021580600.2 mRNA upstream 251331 27860092 ~ 27983425 (-) True LOC110502525
XR_002470344.2 mRNA upstream 506834 28115595 ~ 28115991 (-) False LOC110502532
TU2114269 other downstream 2167974 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4262590 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4374938 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4390091 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 6236562 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 466164 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 1315978 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3542848 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3542848 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3608836 31217597 ~ 31218171 (-) True G1854905

Expression Profile