RNA id: TU2117398


Basic Information

Item Value
RNA id TU2117398
length 1652
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1849821
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27874444 ~ 27876182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGTGTGGGTGGGGCTGTGGGTGCGCACATCATTCTGAGGCCCATATACAGACTGaggcagagagacaaacagaaccCACCAAAGTCAAACTCGAACAACAGTATTTTCAAGTGACCTGTTATTCAGAAGCAATGGATTTATCAGACACTCTAACCTTTCTTGTCTTGTGGGGGTTTTTCATTCTGGAGGACTTCTTTATGTCAACTTCTGTTGTGTTTACACATCCGGGCTGGAGAGCAACAAAAATTAGCAgtataaattaataaaataaacaccTTCAGAGAGCATTCTCTGCTTCTTCTTATTGATTCACTAGCGGCTCAGTTAGGACTGTTTAGTGAACTGTTTAGTGAACCCAGCAAACCATAGCCTACTTCTTCCATTGCAATTTGCTGCATGCGCAGTGAAATATTAATGTAAAATTTCTAACAAAAATTCCAAACAATCAATGTGTCACTGAGAAATAAAACATATTGTCGGTACGTCGTGCATGGTTAAACAAAGGGTACAATCAAGGCATCCTCCAGGATCACGGTGGTTAAGTGGTTTGACGAGGCTGCTGTGAAATCAGAAAGGAACCTGATTATAATGCTCCGAGAATGCATCAATTAATCCTGTTATTTTCCAATTAAGTTCATGGCCGGAGAGGCAGATCCATTCCCGAGTGGAAGCTAATGCTAAGAAGGATATGTGTCTGAATGGATGATGAGGTCAAACAGACCACTGGAGACCTCTATGttaatttttttggggggaggaattgacagtacagtaataacaTTTAGATATTACAGTAGACAAAGAAGAAAGAAAAAATCTCTGCCTTTACCAAGCTCTGAAAATGTGACTATTATCCAAATCCATTACATTATTGACACTGAACGGTGAAGGAAATTGCTTTGAGGACTGAAAAAATGCACAGGTTGTTGACAATTAATATTTCTAAACATGTATGTATGACAAACGACAACAATATTGCACAAAGGAATACTAAGTTTACTCGATTCAATACCTATCGTGGAAGTTCAGCGCTATAGCGCGatttaaatttaaaggcaatgttaccgtgttcacggagactgcattcacagtattcgctgcatatgtcggctcaatcggaaattaacTTAAAATTGTAATTATGCTACAAAGCTGAACTTCAACGATATGGATTTAATTTGAGCACAGCCTCCAATTAACTGAATACTGCAGTGGAAAATTTGCCCAAATACTGTAGCTAGATGTTATGTTATGGAAATAATGTGACTCTTGAAGCATAAGATTTTAAAAGCACAATAAACTCACCACAGGTCTGTGCACATCCCAAAATGCTCTTTCTTGACTATCGAGAATTTTCCTCTCAATCTTATCCCTTTTTTTGTCAACTCTGAGGAGATACACAGTACAGGCAATTACTTTTTTGGTATTTTACAGAAACATATTTTGTGTAATTATTACTGTTTTTTCTTTGCCACTTCCCCTGGCCTAAAATTTGGTGTTATTAGGAAACTGATGAGAAGTGGTAGTTAGAGATGAGGGCATATCAACGCATAGAGTACTACATTTGTTTCATTTGGAAACTTACTTTGCTTGTGCTTCTGCTTGCATAAATATGAACTCCCATTTTCTGGCAAATGCTCTCTGTAGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2117354 lncRNA upstream 25927 27839595 ~ 27848517 (+) True LOC110503097
TU2117227 lncRNA upstream 102236 27771919 ~ 27772208 (+) True G1849658
TU2117229 lncRNA upstream 103938 27770035 ~ 27770506 (+) True G1849660
TU2117221 lncRNA upstream 250041 27624104 ~ 27624403 (+) True G1849652
TU2117216 lncRNA upstream 253909 27620318 ~ 27620535 (+) True G1849647
TU2117412 lncRNA downstream 18947 27895129 ~ 27907142 (+) True G1849835
TU2117598 lncRNA downstream 352379 28228561 ~ 28230666 (+) True G1850012
TU2118325 lncRNA downstream 585065 28461247 ~ 28461479 (+) True G1850667
TU2118327 lncRNA downstream 591112 28467294 ~ 28467615 (+) True G1850669
TU2118346 lncRNA downstream 618353 28494535 ~ 28494738 (+) True G1850688
LOC110503097 mRNA upstream 34105 27790759 ~ 27840339 (+) False LOC110503097
XM_021580597.2 mRNA upstream 105384 27765818 ~ 27769060 (+) True LOC110502523
XR_002470338.2 mRNA upstream 357903 27508395 ~ 27516541 (+) False LOC110502522
XR_002470339.2 mRNA upstream 357903 27508395 ~ 27516541 (+) True LOC110502522
XM_036960072.1 mRNA upstream 369051 27489213 ~ 27505393 (+) False LOC110502521
XM_021580602.2 mRNA downstream 114063 27990245 ~ 27993189 (+) False LOC110502527
XM_036960350.1 mRNA downstream 114063 27990245 ~ 27993189 (+) False LOC110502527
XM_036960075.1 mRNA downstream 125109 28001291 ~ 28078254 (+) False LOC110502528
XM_036960077.1 mRNA downstream 125247 28001429 ~ 28078254 (+) False LOC110502528
XM_036960078.1 mRNA downstream 125247 28001429 ~ 28078254 (+) False LOC110502528
TU2116734 other upstream 598185 27274338 ~ 27276259 (+) True G1849208
TU2112363 other upstream 3520198 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 4527955 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 7089241 20781865 ~ 20785203 (+) True G1840558
TU2107245 other upstream 7357558 20492027 ~ 20516886 (+) True LOC110502429
TU2117481 other downstream 114092 27990274 ~ 27992963 (+) True LOC110502527
TU2117472 other downstream 125693 28001875 ~ 28006214 (+) True LOC110502528
TU2118352 other downstream 621841 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 1167179 29043361 ~ 29075998 (+) True G1851386
TU2120344 other downstream 2142308 30018490 ~ 30025046 (+) True G1852590

Expression Profile