RNA id: TU2118048


Basic Information

Item Value
RNA id TU2118048
length 3119
RNA type TUCP
GC content 0.39
exon number 2
gene id G1850441
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28074925 ~ 28078251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATACATTTATTACCTTTGTAATAACACTTCAATGTTTGAACAAACTTTTTGGCTTATTTGATAACTCCTCCAAAACACATCTGTACTATATTTACAGATATAACAACATAGCTAAAACAATGTCCTTCTCAACAATCGTATCAACAAGAGCTTTAGGCAAAGTTCCTAAATTCTTCTGTAGAACCTTTTTTGGAACAGTACCTTTCTCTCACACAAAACTGGAGATAAATTGCTAACAAGCATGGCTGCACAGGATACAAAAGAGATGCAAAACATACATAAATTCCTTAGTGGTTTACATTCATTATAAATGTTGTACCATTTCATCCAACTCAGTATAAAGTAGACCCTTCAAATGTATCCCTTTGGGAATAACAGGAACTAAACACAAACATTTAAGACATAATAAGTGTAGGGACAGGAGGCTGGTGGTAAACTTTGATTGCAAATGACTCATTAAACCAGATAAAAAAGCAATAATTCTCACTAACATTCACTTGACAGACCCTATTACCCTCCAAGCACACAAATGACCGCAGGCATAACTTTACAGaagcaaaataaaaaaaacattgtctGGTTTGCAGGGTAGCTACCATGGCTCAACATAACTGCACTGTAATAATCAATGCTGAACAGCTTCAATATAGTACCATGATAAAGGGTTGAACACAACCCATATTTTTGGTGGAACAAATCCCTTTTAATATCCTGTCTTTTCAAGATTTCAAAGAAAATGACACACTACTGGTCAGAAATGACAACCAAGTCAGGATATCTTATTGATACGATAGTGACATGGGCACAAATCAGTTAGAAGAAGTGGTATGGCGTAAACACAGGATACAACAGATCTTCATGAGAAAAAGCATGCAACATGAGAAACAAGTGACTTCTCTCTGTGCGTGATTACAGAATGGTTGATGCTAAGACGTCTGCTGTCAGTGATGTTGCTGTTGTGTGGAAACAAAGCTTTGGCATGTAAGTTGCTTTGAAATGTTCTCTCTACATCTGCTTCAGCATTCTGTACCTACTGTCATTTAGCTTCAAGATTTAGTTTTTCACTTTGGGCTCTACATAGAGTTCACTGCATTGTCCGTCAAATACCGTACCATCTACCAACAAACATTCTGCAAATAAAGAGTACTTTAAACAAACAGTCTTATATGATAGAATGCACAAAGACTATTAACTTCCAGGCTTAATATGGGGGTTCAATCTAAAACAGTTACAGCAAAAACCTTCCAGAGTCAGACAGCGTTAACAAAAGGGTATGAGAATACTGTTTTACATGAACATAATACAGAGATCAGAGTGACTTCGTCCTTTGATGATAAGCAGCACCACTGCACACCTAATCCTGTTACTTCATCAAATATAGCTTTACAAGAATCCCAGATATCTGACTGCACACCTAATCCTGTTACTTCATCAAATATAGCTTTACAAGAATCCCAGATATCTGACTGCACACCTAATCCTGTTACTTCATCAAATATAGCTTTACAAGAATCCCAGATATCTGATTGCACAACTGATCCTGAAAATTGTATATTTCCACTATTCTTAATTTAAGCTAGAACACATGTTGAGGACACAATCTTGGTAAATGTAGAAATGTGTCTAGGCTAGGGGCTGTCATATGAAATAGAGTTGAGTTTACACCTTTGGTGTGAGTTCCCTCCTGGGTGAGAGGTAGTGGCAGTCCAAATAGCTATATTCTAATAGAAACAATTCCCTGCTGAGCAGCTTAGAGAGAGAAGTAAAGGAGGCATTCGACACTGTAGTAGTGTGGAGGCATTCGACACTGTAGTAGGTTGCTTCTCTGTCCGCAGCTCTAAAAGCGTATAAAGTGTAAGGAAAGATAAAAGCACACAGTCTGTGAATAATGACATGTCTCCTGAATAGATAGAGGAACACATAGTAGGATTCAACACAGAATATAGACCACAGAAAGACTAACTGACAAAGACCATTGACATGACTACAGGAGACATAATGACAATGACTAAGAAAACCACAGGAGGCCAACAAACAGAATCAGAGAGAGGGGCCTGCTGTTTTGACagactgctctctttctctgctgcAGTCTCATGACACAGCCTGACGGCACCAAAGATTATGGGGTAAAGGTAATTATCAAAGAGACTAATAATGAACTAATTAGAAACCACAGGAACTCATTTGTGAATGTATAAAGTAatgaaaacataaaaaaatacatgaaaCTGATTATTACCTCAGaaagataaaaaataataatgtgaatACAAAATAATACTTTTCTAAATACATATGACATACAGACTGCAGCCCAACTACAGCAGCTGCTGGTGGATACAACACTGACCTTCGTGGAATGTCAATCAATCAAAACACTGAGGGGTCCAAGGTCAATCCACTAGGTTCTGCGTttagttgttgatgtcactttATTGACTTCATTTCCCCATCTCACTAAGTGCTTACATTTGGCTTGGTACAAATACATCTGTGCTTTGAGTTAATACAAAATGCATAGGTATTCCAATATGAGGAATCAGGCTTTCACAGGCAAAATTGTTAAAGTGCATGTCATTGATAAAACAGCATACTACGAATGCAGTATCAATGTAATTATTTTGTACTAATCATTTGGCCTGTTCCCTTTAACAAAAATGGACAACTACTGGGCAGTACCTGTCCTTCATAACTAGTCAAATACCCTTCATGCATAGATACTCCACAGAAACATCTAACCACTATGTGGAGTGAACACTGGACTTTCTATACCACAGATGGCTCTTCTCTTTTTTTGGCACTTCTGGTTAAACTATGGCTTCTTGTTATGGccttaaaaaagaaaaaagaaaaaaaagagttgaATAGTTATTGTTCTGCTGGAGGGTGGACAACTGAGAACCAGCTAGGCTGGAGACTGGCCTACAGAAGCCCAAAGAGAGGCACTGAAGGCTGGTTCTCTGTCGTGTTAAGTCCTGGCGGAGTGGAGCTCTACCACCGACCACTGACACTAGCCATGTCAGCGTGGAACTGACGAGACAGACGACCGCTGGCTCCCCCTTCCAGGAAGGAGGATCTGATAGGAGCCTCAAACAGCTTCCTTCGGTTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2117982 lncRNA downstream 81956 27990184 ~ 27992969 (-) False G1850380
TU2117983 lncRNA downstream 81956 27990184 ~ 27992969 (-) False G1850380
TU2117984 lncRNA downstream 81956 27990184 ~ 27992969 (-) True G1850380
TU2117844 lncRNA downstream 300523 27774132 ~ 27774402 (-) True G1850249
TU2117843 lncRNA downstream 302675 27771213 ~ 27772250 (-) True G1850248
TU2118082 lncRNA upstream 37349 28115600 ~ 28120442 (-) True LOC110502532
TU2118099 lncRNA upstream 58313 28136564 ~ 28137101 (-) True G1850489
TU2118104 lncRNA upstream 71364 28149615 ~ 28149901 (-) True G1850494
TU2118379 lncRNA upstream 386337 28464588 ~ 28466261 (-) True G1850718
TU2118438 lncRNA upstream 509219 28587470 ~ 28587763 (-) True G1850764
XM_021580599.2 mRNA downstream 91500 27860092 ~ 27983425 (-) False LOC110502525
XM_021580600.2 mRNA downstream 91500 27860092 ~ 27983425 (-) True LOC110502525
XM_036960074.1 mRNA downstream 92746 27860092 ~ 27982179 (-) False LOC110502525
XM_021580601.2 mRNA downstream 215619 27850104 ~ 27859306 (-) True LOC110502526
XM_021580595.2 mRNA downstream 621045 27449622 ~ 27453880 (-) True si:ch211-248a14.8
XR_002470344.2 mRNA upstream 37344 28115595 ~ 28115991 (-) False LOC110502532
XM_021580607.2 mRNA upstream 60917 28139168 ~ 28148897 (-) True fam13c
XM_021580614.2 mRNA upstream 102835 28181086 ~ 28196057 (-) False LOC110502533
XM_021580612.2 mRNA upstream 102835 28181086 ~ 28196157 (-) False LOC110502533
XM_021580613.2 mRNA upstream 102835 28181086 ~ 28196213 (-) False LOC110502533
TU2114269 other downstream 2634538 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4729154 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4841502 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4856655 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 6703126 21345514 ~ 21371799 (-) True G1841959
TU2118971 other upstream 846488 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3073358 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3073358 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3139346 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3901746 31979997 ~ 31981333 (-) True G1855326

Expression Profile