RNA id: TU2118982


Basic Information

Item Value
RNA id TU2118982
length 304
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1851273
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28942714 ~ 28943017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcactccacactgccctttcccacctggacaaaaggaatgcttacgtgagaatgctattcattgactacagctcagcgttcaacaccatagtaccctcaaagctcatcactaagctaaggatcctgggactaaacacctccctctgcaactggatcctggacttcctgacaggccgccccaggtggtgagggtaggtagcaacacatctgccacgctgatcctcaacattggagctccacaggggtgtgtgtgctcagtcccctcctgtactccctgttcacccatgactgcatggccaggcac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2118970 lncRNA downstream 18331 28924162 ~ 28924383 (-) True G1851262
TU2118968 lncRNA downstream 19046 28923422 ~ 28923668 (-) True G1851260
TU2118925 lncRNA downstream 21683 28919846 ~ 28921031 (-) False LOC110502553
TU2118791 lncRNA downstream 115973 28821474 ~ 28826741 (-) True G1851089
TU2118720 lncRNA downstream 162044 28780384 ~ 28780670 (-) True G1851020
TU2118985 lncRNA upstream 4095 28947112 ~ 28947406 (-) True G1851276
TU2118988 lncRNA upstream 8744 28951761 ~ 28951966 (-) True G1851279
TU2119000 lncRNA upstream 26143 28969160 ~ 28969749 (-) False LOC110503060
TU2119009 lncRNA upstream 37134 28980151 ~ 28980359 (-) True G1851300
TU2119001 lncRNA upstream 38547 28981564 ~ 28981892 (-) True LOC110503060
XR_002470346.2 mRNA downstream 10114 28920684 ~ 28932600 (-) False LOC110502553
LOC110503100 mRNA downstream 64287 28859178 ~ 28878427 (-) True LOC110503100
XM_021580666.2 mRNA downstream 249065 28688014 ~ 28693649 (-) False LOC110502548
XM_021580668.2 mRNA downstream 249065 28688014 ~ 28693649 (-) True LOC110502548
XM_021580665.2 mRNA downstream 256060 28683439 ~ 28686654 (-) True LOC110502547
XR_002470431.2 mRNA upstream 26150 28969167 ~ 28981838 (-) False LOC110503060
XM_021580673.2 mRNA upstream 178029 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA upstream 178029 29121046 ~ 29632760 (-) True LOC110502554
XM_036960861.1 mRNA upstream 797538 29740555 ~ 29746968 (-) True LOC110528531
XM_021580677.2 mRNA upstream 1211052 30154069 ~ 30504037 (-) False LOC110502559
TU2118971 other downstream 10169 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 864463 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 3502327 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 5596943 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 5709291 23182987 ~ 23233423 (-) True G1843946
TU2122822 other upstream 2208592 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 2208592 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 2274580 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3036980 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 3572049 32515066 ~ 32515408 (-) True G1855821

Expression Profile