RNA id: TU2119988


Basic Information

Item Value
RNA id TU2119988
length 270
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1852247
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 29653758 ~ 29654027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttcaaatatctattcgataatatatccaccgggacaattggtttttcagtaggaccgattggaataatggctacctactgaattttacgcgagaatcactctcggagccatcaggtgaccagttgcgcaatgtagccgcttacgggtattcttcaacataaatgcgtaaaactacgtcacaatgctgtagacaccttggggaatacagagaaaaagtaatctggttgatagcccattcactgctcaatagggacacattggaacgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2119874 lncRNA downstream 129025 29524511 ~ 29524733 (-) True G1852136
TU2119871 lncRNA downstream 131000 29522557 ~ 29522758 (-) True G1852133
TU2119864 lncRNA downstream 136854 29516676 ~ 29516904 (-) True G1852126
TU2119836 lncRNA downstream 174078 29479450 ~ 29479680 (-) True G1852099
TU2119787 lncRNA downstream 250497 29403036 ~ 29403261 (-) True G1852052
TU2120001 lncRNA upstream 5344 29659371 ~ 29659631 (-) True G1852260
TU2120004 lncRNA upstream 6900 29660927 ~ 29661158 (-) True G1852263
TU2120014 lncRNA upstream 14362 29668389 ~ 29668681 (-) True G1852273
TU2120239 lncRNA upstream 125342 29779369 ~ 29779695 (-) True G1852487
TU2122008 lncRNA upstream 300797 29954824 ~ 29955041 (-) True G1854107
XM_021580673.2 mRNA downstream 20998 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA downstream 20998 29121046 ~ 29632760 (-) True LOC110502554
XR_002470431.2 mRNA downstream 671920 28969167 ~ 28981838 (-) False LOC110503060
XR_002470346.2 mRNA downstream 721158 28920684 ~ 28932600 (-) False LOC110502553
LOC110503100 mRNA downstream 775331 28859178 ~ 28878427 (-) True LOC110503100
XM_036960861.1 mRNA upstream 86528 29740555 ~ 29746968 (-) True LOC110528531
XM_021580677.2 mRNA upstream 500042 30154069 ~ 30504037 (-) False LOC110502559
XM_036960140.1 mRNA upstream 500042 30154069 ~ 30504037 (-) False LOC110502559
XM_036960141.1 mRNA upstream 646077 30300104 ~ 30504037 (-) False LOC110502559
XM_036960142.1 mRNA upstream 703260 30357287 ~ 30504037 (-) True LOC110502559
TU2118971 other downstream 721213 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 1575507 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 4213371 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 6307987 23345091 ~ 23345771 (-) True LOC110502462
TU2111172 other downstream 6435488 23215485 ~ 23218270 (-) True LOC110502461
TU2122822 other upstream 1497582 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 1497582 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 1563570 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 2325970 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 2861039 32515066 ~ 32515408 (-) True G1855821

Expression Profile