RNA id: TU2120004


Basic Information

Item Value
RNA id TU2120004
length 232
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1852263
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 29660927 ~ 29661158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattcacctgcgtttccagtggtgctggggattccctggctggctattcacaatccgACGATTTCGTGGAAACAGGGAACTCTCCAGGGGTGGTCTGAtgagtgttcaggcaggtgtgtaggagtttccatcggtgcgacaacggtggagagtccagaccaggtttccaccgtgcgcattcccgctgagtatgccgatttggctatcgctttcagtaaaaagaaagcgaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2120001 lncRNA downstream 1296 29659371 ~ 29659631 (-) True G1852260
TU2119988 lncRNA downstream 6900 29653758 ~ 29654027 (-) True G1852247
TU2119874 lncRNA downstream 136194 29524511 ~ 29524733 (-) True G1852136
TU2119871 lncRNA downstream 138169 29522557 ~ 29522758 (-) True G1852133
TU2119864 lncRNA downstream 144023 29516676 ~ 29516904 (-) True G1852126
TU2120014 lncRNA upstream 7231 29668389 ~ 29668681 (-) True G1852273
TU2120239 lncRNA upstream 118211 29779369 ~ 29779695 (-) True G1852487
TU2122008 lncRNA upstream 293666 29954824 ~ 29955041 (-) True G1854107
TU2122012 lncRNA upstream 300571 29961729 ~ 29961935 (-) True G1854111
TU2122018 lncRNA upstream 306810 29967968 ~ 29968248 (-) True G1854117
XM_021580673.2 mRNA downstream 28167 29121046 ~ 29632760 (-) False LOC110502554
XM_021580674.2 mRNA downstream 28167 29121046 ~ 29632760 (-) True LOC110502554
XR_002470431.2 mRNA downstream 679089 28969167 ~ 28981838 (-) False LOC110503060
XR_002470346.2 mRNA downstream 728327 28920684 ~ 28932600 (-) False LOC110502553
LOC110503100 mRNA downstream 782500 28859178 ~ 28878427 (-) True LOC110503100
XM_036960861.1 mRNA upstream 79397 29740555 ~ 29746968 (-) True LOC110528531
XM_021580677.2 mRNA upstream 492911 30154069 ~ 30504037 (-) False LOC110502559
XM_036960140.1 mRNA upstream 492911 30154069 ~ 30504037 (-) False LOC110502559
XM_036960141.1 mRNA upstream 638946 30300104 ~ 30504037 (-) False LOC110502559
XM_036960142.1 mRNA upstream 696129 30357287 ~ 30504037 (-) True LOC110502559
TU2118971 other downstream 728382 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 1582676 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 4220540 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 6315156 23345091 ~ 23345771 (-) True LOC110502462
TU2111172 other downstream 6442657 23215485 ~ 23218270 (-) True LOC110502461
TU2122822 other upstream 1490451 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 1490451 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 1556439 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 2318839 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 2853908 32515066 ~ 32515408 (-) True G1855821

Expression Profile