RNA id: TCONS_00052211


Basic Information

Item Value
RNA id TCONS_00052211
length 712
lncRNA type lincRNA
GC content 0.38
exon number 2
gene id XLOC_026851
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58057614 ~ 58059819 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTAAGAATCCAAaatatcagaccctgagaactgttatggaattttCATGAGACAAGATGCAGTGCTCCAATGCACTTTCTAATCTGAGAAATGATGAAGAAAGCAGCTGTTCAGCTGTTCaattcaaatcactgttgacaatgcaaacttagGCTAGAGAAACAGAGCTACACTACAGCAGGGGGTAATGCGAGAAAGTCATCCTTCTCCTTCCACCTCAAGccccccttcttgacccttatgttaccttctgattagagcacatttcacataaaatgttcaaggttttaatatggtttatcttgcagcactatattcatgtttggtaacattttaaatgtctctgtgtgattggtaaagtggtcttattttacagtaatatttcactGGTATATGTTGATTGGGTTTTTGACATAGATAAGATCTTCACAAGATGCTCTCCCTCCTCAGAGATGGTTAAGTCCTCAAATTCACCAGGCAAGGGTTTCTGTGacacttctattgtcttgaatttatgggtgtttgttttgacttgagtatataaggtaaaGATGTGATATGGGTCAGGGggatcttgtaaaaagacaccccattgcagtatctctgagacttatgctgcaatgtatttctctgGTCAGGTTTGCATCTATAattcttggatttatctttgattaatggatgttgtattgctacagtctcatctctgaattg

Function

GO:

id name namespace
GO:0030149 sphingolipid catabolic process biological_process
GO:1901615 organic hydroxy compound metabolic process biological_process
GO:0097164 ammonium ion metabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0046466 membrane lipid catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156981

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053147 lncRNA downstream 1019944 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052190 lncRNA downstream 1443479 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00052184 lncRNA downstream 1644591 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00053146 lncRNA downstream 2218100 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052162 lncRNA downstream 2729101 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00053148 lncRNA upstream 48612 58108431 ~ 58110148 (-) False XLOC_026854
TCONS_00052214 lncRNA upstream 48612 58108431 ~ 58110154 (-) True XLOC_026854
TCONS_00052219 lncRNA upstream 150486 58210305 ~ 58212028 (-) False XLOC_026858
TCONS_00052218 lncRNA upstream 150486 58210305 ~ 58212028 (-) False XLOC_026858
TCONS_00052506 lncRNA upstream 150493 58210312 ~ 58217276 (-) True XLOC_026858
TCONS_00052210 mRNA downstream 11295 58039261 ~ 58046319 (-) True XLOC_026850
TCONS_00052209 mRNA downstream 277813 57766627 ~ 57779801 (-) True XLOC_026849
TCONS_00052207 mRNA downstream 292445 57747716 ~ 57765169 (-) False XLOC_026848
TCONS_00052208 mRNA downstream 295367 57751936 ~ 57762247 (-) True XLOC_026848
TCONS_00052206 mRNA downstream 313291 57741933 ~ 57744323 (-) True XLOC_026847
TCONS_00052212 mRNA upstream 7931 58067750 ~ 58078522 (-) True XLOC_026852
TCONS_00052213 mRNA upstream 45080 58104899 ~ 58116314 (-) True XLOC_026853
TCONS_00052215 mRNA upstream 98776 58158595 ~ 58165254 (-) True XLOC_026855
TCONS_00052216 mRNA upstream 129084 58188903 ~ 58189429 (-) True XLOC_026856
TCONS_00052217 mRNA upstream 137206 58197025 ~ 58205045 (-) True XLOC_026857
TCONS_00052189 other downstream 1440573 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052186 other downstream 1482649 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052174 other downstream 2407197 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052166 other downstream 2576457 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 2978370 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052254 other upstream 2391681 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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