RNA id: TU2123210


Basic Information

Item Value
RNA id TU2123210
length 207
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1855219
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31756892 ~ 31757098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTACTGTTGTATATTCTTAGAAAATGGTAACCACGTTGTAGATCATTTATGTTTGACAATAAGGCAATGTTCTCCTAACTTTACCACCAAAACATGCTACAAATGTTCTTAGAAGGGTTTTGCTAACATAGATAGAATGTTCCACCTAACTAACGAAAAACTGGACACTCAAACATTAGGGGAACATTATGTGTTACATTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2123204 lncRNA downstream 9848 31746824 ~ 31747044 (-) True G1855213
TU2123090 lncRNA downstream 32662 31723607 ~ 31724230 (-) True G1855107
TU2123201 lncRNA downstream 35026 31721659 ~ 31721866 (-) True G1855210
TU2123071 lncRNA downstream 263801 31492846 ~ 31493091 (-) True G1855089
TU2123067 lncRNA downstream 270639 31486004 ~ 31486253 (-) True G1855085
TU2123213 lncRNA upstream 1810 31758908 ~ 31759569 (-) True G1855222
TU2123101 lncRNA upstream 70643 31827741 ~ 31828198 (-) True G1855118
TU2123263 lncRNA upstream 84692 31841790 ~ 31842778 (-) True G1855263
TU2123272 lncRNA upstream 106795 31863893 ~ 31864407 (-) True LOC110503102
TU2123283 lncRNA upstream 115263 31872361 ~ 31872770 (-) True G1855277
XM_036960183.1 mRNA downstream 11101 31724575 ~ 31745791 (-) False LOC110502587
XM_036960181.1 mRNA downstream 11101 31725676 ~ 31745791 (-) False LOC110502587
XM_036960182.1 mRNA downstream 11101 31725676 ~ 31745791 (-) False LOC110502587
XM_036960184.1 mRNA downstream 11101 31725676 ~ 31745791 (-) True LOC110502587
XM_021580729.2 mRNA downstream 113749 31638651 ~ 31643143 (-) True LOC110502585
XM_021580741.2 mRNA upstream 5726 31762824 ~ 31817656 (-) False LOC110502589
XM_021580742.2 mRNA upstream 5726 31762824 ~ 31817656 (-) True LOC110502589
XM_021580746.2 mRNA upstream 74282 31831380 ~ 31854368 (-) False galm
XM_021580748.2 mRNA upstream 74282 31831380 ~ 31854369 (-) True galm
LOC110503102 mRNA upstream 98834 31855932 ~ 31865936 (-) False LOC110503102
TU2122867 other downstream 538721 31217597 ~ 31218171 (-) True G1854905
TU2122822 other downstream 567296 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other downstream 586915 31151609 ~ 31169977 (-) True LOC110502574
TU2118971 other downstream 2824347 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 3678641 28074925 ~ 28078251 (-) True G1850441
TU2123334 other upstream 222899 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 757968 32515066 ~ 32515408 (-) True G1855821
TU2123854 other upstream 758651 32515749 ~ 32516281 (-) True G1855822
TU2124285 other upstream 880327 32637425 ~ 32646140 (-) False G1856217
TU2124286 other upstream 880327 32637425 ~ 32646140 (-) True G1856217

Expression Profile