RNA id: TU2123291



Basic Information


Item Value
RNA id TU2123291
length 302
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1855285
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31885497 ~ 31885798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggaacatagacagagactaaaTCTATCCTCTCTCCCCAATCCCCATGTCTCTCCTGAGTGTCAGATGTGATCTTGTGATGAATTTTAAGGACTCAACATGTGATGGTGTAATTGGTGAGGAGATGCACTGTGTCACAGCGGGCACGGTTCCACGATGGGAAAAAATGGGGCTTAGACCCGTTAGTTGAAACTTGTGACTCCCCAGTTTTAGTTTAATGTCCCTACATTAAAATTGCAAAAAAGTACAAATTATTAAACGAAGGTAGGCACAACATCTGTATCTCCGCTGCACTGTTTCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2123290 lncRNA downstream 509 31884225 ~ 31884988 (-) True G1855284
TU2123285 lncRNA downstream 9195 31876064 ~ 31876302 (-) True G1855279
TU2123284 lncRNA downstream 10588 31874375 ~ 31874909 (-) True G1855278
TU2123283 lncRNA downstream 12727 31872361 ~ 31872770 (-) True G1855277
TU2123272 lncRNA downstream 21090 31863893 ~ 31864407 (-) True LOC110503102
TU2123255 lncRNA upstream 5269 31891067 ~ 31891533 (-) True G1855255
TU2123322 lncRNA upstream 74814 31960612 ~ 31960814 (-) True G1855316
TU2123333 lncRNA upstream 97031 31982829 ~ 31984556 (-) True LOC110502599
TU2123424 lncRNA upstream 232155 32117953 ~ 32138894 (-) True G1855405
TU2123542 lncRNA upstream 384720 32270518 ~ 32270744 (-) True G1855516
LOC110503102 mRNA downstream 19561 31855932 ~ 31865936 (-) False LOC110503102
XM_021580748.2 mRNA downstream 31128 31831380 ~ 31854369 (-) True galm
XM_021580746.2 mRNA downstream 31129 31831380 ~ 31854368 (-) False galm
XM_021580741.2 mRNA downstream 67841 31762824 ~ 31817656 (-) False LOC110502589
XM_036960202.1 mRNA upstream 6181 31891979 ~ 31959434 (-) False LOC110502596
XM_036960201.1 mRNA upstream 6181 31891979 ~ 31959436 (-) False LOC110502596
XM_036960200.1 mRNA upstream 6181 31891979 ~ 31959438 (-) False LOC110502596
XM_036960197.1 mRNA upstream 6181 31891979 ~ 31959439 (-) False LOC110502596
XM_036960199.1 mRNA upstream 6181 31891979 ~ 31959440 (-) False LOC110502596
TU2122867 other downstream 667326 31217597 ~ 31218171 (-) True G1854905
TU2122822 other downstream 695901 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other downstream 715520 31151609 ~ 31169977 (-) True LOC110502574
TU2118971 other downstream 2952952 28924739 ~ 28932545 (-) True LOC110502553
TU2118048 other downstream 3807246 28074925 ~ 28078251 (-) True G1850441
TU2123334 other upstream 94199 31979997 ~ 31981333 (-) True G1855326
TU2123853 other upstream 629268 32515066 ~ 32515408 (-) True G1855821
TU2123854 other upstream 629951 32515749 ~ 32516281 (-) True G1855822
TU2124285 other upstream 751627 32637425 ~ 32646140 (-) False G1856217
TU2124286 other upstream 751627 32637425 ~ 32646140 (-) True G1856217

Expression Profile