RNA id: TU2121750


Basic Information

Item Value
RNA id TU2121750
length 2883
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1853871
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31978665 ~ 31982219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTAGACTTGATGTTTGCAGATTGTAATCGGATGTTGGTGGTTAGCTACTGCTAGTTGCATTAAGTTACTCTCGAAAACACGTTGTTGAGTTTTACAAGATATCTGAAGTGTGAGCTACATTTCAAAATGAAAGTTTAGTCATGGTCATTTTCAGTTGAGGGAAAATATTATCATTGCTGTGATAATGACATTAAATGGGGTTTATCATTTTTCAAATTCTAGAGGGGAGAACATGACCCGTcccacgtgtgcacatttgtcGTGGCCCGTGGACAGTATTGTACGTATTTATTTGTTAAAAAGACAAGATCTATTCTTGACAAGGTTATTGTGAACTGTTAGCGAGGCAAACTGAgtggtttttgttttgttttcttatTTTACAGAACCGTTTCTTATGCACTTTGTCTTGATACATTTTGTTTAGTGATTGGATTCCCTAATACCAAAGTAGGTCCAGAGATTTTGACTCATTGTACTTTTGTTTCTAGCACTTCAAGCTCATTCAGTAAGCAGGTTAGAAAAAACAGTAAAGCAATTCCTTATTATTGTAGTCTATATACACTTTATTAAAATAACTTTCCAAGTATAATCTATTCAAAGATACAGTAGGATGAAAATGAGGAGGAATTAACGCAGAATAATTTACTGCATGGGAGTAAACAAATATCATAATGCATACAGTAAATGAGGAAAACAACGattaaaacatttgatctcatcTCCATACTTCAGAATGAACCACAATTATATAAagtcatacatacagtgcattcgtaaaatcctctcactgtcaactgcatttactatcagcaaatttaacatgtgtaaatatttgtatgaacataagattcaacaaatAAGAcacactgaacaagttccacagatatgtgactaacagaaatggaataatgtgtccctgaacaaagggggggtccaaatcaaaagtaacagtcagtaccaGCTACATTaattactgcagtgcatctcctcctaatggactgcaccagatttgccagtccttgctgtgagatgttaccccactcttccaccaaggcacctgcacgtTCCCAGACATTTTTGGGGGAAtaaccctagccctcaccctccgatccaacaggtcctagatgtgctaaatgggattgagatccgggctcttcgctggccatggcagaacactgacattcctgtcttgtaggaaatcatgcacagaacgagcagtatggctggtggcattgtcatgctgtaccacatgagggaggaggatgtcttccctgtaacgcatagtgttgagattacctgcaatgacaagctccgtcagatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaatcgatcccgctccagagtacaggcctcggtgtaacgctcattccttcgacgataaacgcaaatgcgaccatcacccctggtgagacaaaaccgcgactcgtcagagcactttttgcaagtcctgcctggtccagcgatggtgggtttgtgcccataggcgacgttgttgccggtgatgtctgccttacaataggcctacaagcccagcctctctcagcctattgcggacagtctgagcacggatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgtgcggatgtaccgatcctgtgcaggtgttgttacacgtggtctggcactgcgaggacaatcagctgtccgtcctgtctccctgtagcggtgtcttaggtgtctcacagtacagacatggcaatttatttccctggccacatctccAGTCCTcaagcctccttgcagcatgcctaaggcacattcactcagatgagcagggaccctgggcatctttcttttggtgaataaatatgacatttacataaaagtattcagaccctttaatctgtactttgttgaagcaccttaggcagcgattacagccttaagtcttcttgtaaataaggtatttctgttttttattttcaatacatttgcaaaaatgtataaaaaactatttttgtttgtcattatggggtattgtgtgtagattgaggattttttaaaatgtaatccattttagaattaggctgtaacgtaaacaaaatgtggaaaaagtcaaaaggactgaatactttccaactGCTCTGTATTTAAGTGGAAATAGATATATTATAAAAGGATCAGCATGTTTACAACTTTTTTCTGTCAATTACTTCCCCTCACTGCAGCCCCAACAAAAAGCTAACGTAAGCATCCCACATGACATAACATTCAAAGGGGATCTTTGTAAAGGTTTTCCTCAGAAGTCTCACGTGATAGACCCAATGTGTGGAGTGGGAACTATCACACAAGAGCCAGGTTGattgagagagtagagaggaaacaTTCAGAACACACCTGGCCAAGAGAAGGACGTGAGAACAAGATTTTTGGGCCTTTTGATGTTAACACAGAACACGACCAAACATCAAGAGAGGAatatattcagagagagaaagatgagacgAAACACATAAACTCCTTCCATGCCCTGTGGTAGGTACCTTGATGTCAGACAAAGGCCAGGCTATAGTGGATCTCAGCTCAGTAGTCTTCATAGTCTTCATATAGCTCCAGTTGGCTAAAGGAAGCCTGGAGAGCTAGATGAAACCATACGCTATTTGAAATACTCAACTAGAAGAGATTAACAAAACAAAACCATTAAATATGGTTGACGACACAGAGGGCATCAGAACACGTTCTGATGATGTCACCAACCTGAGGAGAGGACCCCGTGGTCATCGCAtattgtacatattacctcaactaccatGTACCCTCCGTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2121731 lncRNA upstream 77767 31900379 ~ 31901570 (+) True G1853856
TU2121714 lncRNA upstream 123924 31855189 ~ 31855413 (+) True G1853841
TU2121713 lncRNA upstream 124484 31854613 ~ 31854853 (+) True G1853840
TU2121646 lncRNA upstream 212262 31765918 ~ 31767075 (+) False G1853785
TU2121800 lncRNA downstream 13432 31995651 ~ 31995853 (+) True G1853917
TU2121832 lncRNA downstream 54011 32036230 ~ 32040475 (+) False G1853944
TU2121833 lncRNA downstream 54011 32036230 ~ 32040475 (+) True G1853944
TU2121858 lncRNA downstream 98252 32080471 ~ 32080968 (+) True G1853966
TU2121882 lncRNA downstream 135087 32117306 ~ 32138022 (+) True G1853990
XM_036960424.1 mRNA upstream 3301 31969957 ~ 31976036 (+) True LOC110502597
XM_021581423.2 mRNA upstream 87804 31871734 ~ 31891533 (+) True LOC110503062
XM_021580751.2 mRNA upstream 109594 31867794 ~ 31869743 (+) False morn2
XM_036960218.1 mRNA downstream 466567 32448786 ~ 32474652 (+) True mrps5
XM_036960219.1 mRNA downstream 507048 32489267 ~ 32529200 (+) False LOC110502602
XM_036960221.1 mRNA downstream 507048 32489267 ~ 32529200 (+) False LOC110502602
XM_036960220.1 mRNA downstream 508112 32490331 ~ 32529200 (+) False LOC110502602
XM_036960232.1 mRNA downstream 590227 32572446 ~ 32646173 (+) False LOC110502603
TU2121728 other upstream 109647 31867864 ~ 31869690 (+) True morn2
TU2121485 other upstream 355157 31620417 ~ 31624180 (+) True LOC110502584
TU2120954 other upstream 1146894 30826585 ~ 30832443 (+) False G1853162
TU2120879 other upstream 1172883 30805550 ~ 30806454 (+) True G1853092
TU2120765 other upstream 1326121 30547124 ~ 30653216 (+) True LOC110502560
TU2123756 other downstream 520150 32502369 ~ 32502657 (+) False LOC110502602
TU2123762 other downstream 526019 32508238 ~ 32509474 (+) True G1855733
TU2123752 other downstream 536708 32518927 ~ 32519677 (+) True G1855723
TU2124152 other downstream 955688 32937907 ~ 32942047 (+) False G1856094
TU2124153 other downstream 955688 32937907 ~ 32942047 (+) False G1856094

Expression Profile

TU2121750 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
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TU2121750 Expression in each Bioproject

Bar chart with 7 bars.
TU2121750 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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