RNA id: TU2123844


Basic Information

Item Value
RNA id TU2123844
length 625
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1855812
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 32497305 ~ 32497929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgatatcacgcctcacccggccatgattacagacacctgtgtgtgtcctttgacactatataaactagtgatctgcagtgtttgtcattataccctgatgaagacagcttgtctgttgaaacgttggttattaggttattcaattattgcatctgagctcctagagtgtgtggcTCTCCTTTTCTTTTCCAAGTGAACAGTACGTACCTGGTAATCTGGTTTGGTAAAGTAGTCAAGGCCTAAAACATGATCCAGGAACACATGAAACTCAGAAGGCATGTGTTTGAGCAGCATTCTGTGGTCGTAGCGCTCCTTAATCTGACCCACTTGCTCCTGGTGGCACACAAGAGATACAGTAGAAACCATTAGAAATCAGTTGAGCCCAGCAAGACACCAGTAGACACCAGTAACCATTCTCTACTGCAGGGTTTCTTAATCCTGTTCCTGGGGACCCAAAGAAGGGatttttggtttttgccctaacactacacacatGATTCCACTAATCAAAGGTTTGATGATGAATAGTTGAGTCTAACCAGGTGTGTAGTGCTCGGCCAAACATAACAATGTGCACCCATTTGGGTTCACTGCACCAGGATACAGAAATATTGGAAATAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2123840 lncRNA downstream 9099 32487992 ~ 32488206 (-) True G1855808
TU2123801 lncRNA downstream 16388 32480559 ~ 32480917 (-) True G1855770
TU2123816 lncRNA downstream 19176 32430963 ~ 32478129 (-) True G1855785
TU2123826 lncRNA downstream 22658 32474047 ~ 32474647 (-) True G1855795
TU2123824 lncRNA downstream 49372 32446779 ~ 32447933 (-) True G1855793
TU2123845 lncRNA upstream 159 32498088 ~ 32498409 (-) True G1855813
TU2123848 lncRNA upstream 5108 32503037 ~ 32503301 (-) True G1855816
TU2123850 lncRNA upstream 7020 32504949 ~ 32505156 (-) True G1855818
TU2123862 lncRNA upstream 21851 32519780 ~ 32520742 (-) True G1855828
TU2123860 lncRNA upstream 44516 32542445 ~ 32544811 (-) True G1855826
XM_021580769.2 mRNA downstream 258007 32036219 ~ 32239298 (-) True LOC110502600
XM_021580767.2 mRNA downstream 258009 32036219 ~ 32239296 (-) False LOC110502600
XR_002470355.2 mRNA downstream 512737 31982805 ~ 31984568 (-) False LOC110502599
XR_005039206.1 mRNA downstream 512757 31982805 ~ 31984548 (-) False LOC110502599
XM_036960191.1 mRNA downstream 537859 31891979 ~ 31959446 (-) True LOC110502596
XM_036960230.1 mRNA upstream 155406 32653335 ~ 32679030 (-) False LOC110502604
XM_036960229.1 mRNA upstream 155406 32653335 ~ 32679332 (-) False LOC110502604
XM_036960231.1 mRNA upstream 155406 32653335 ~ 32679613 (-) False LOC110502604
XM_036960227.1 mRNA upstream 155406 32653335 ~ 32703764 (-) False LOC110502604
XM_036960222.1 mRNA upstream 155406 32653335 ~ 32858193 (-) False LOC110502604
TU2123334 other downstream 515972 31979997 ~ 31981333 (-) True G1855326
TU2122867 other downstream 1279134 31217597 ~ 31218171 (-) True G1854905
TU2122822 other downstream 1307709 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other downstream 1327328 31151609 ~ 31169977 (-) True LOC110502574
TU2118971 other downstream 3564760 28924739 ~ 28932545 (-) True LOC110502553
TU2123853 other upstream 17137 32515066 ~ 32515408 (-) True G1855821
TU2123854 other upstream 17820 32515749 ~ 32516281 (-) True G1855822
TU2124285 other upstream 139496 32637425 ~ 32646140 (-) False G1856217
TU2124286 other upstream 139496 32637425 ~ 32646140 (-) True G1856217
TU2125229 other upstream 1098229 33596158 ~ 33601841 (-) True LOC110502621

Expression Profile